Structure of PDB 4y4p Chain 1O Binding Site BS04

Receptor Information

>4y4p Chain 1O (length=122) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

MIQPQTYLEVADNTGARKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRG
AVKEGDVVKAVVVRTKKEIKRPDGSAIRFDDNAAVIINNQLEPRGTRVFG
PVARELREKGFMKIVSLAPEVL

Ligand information

InChI=1S/Mg/q+2

JLVVSXFLKOJNIY-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Mg+2]
CACTVS 3.341	[Mg++]

Formula

Mg

Name

MAGNESIUM ION

PDB chain

4y4p Chain 1O Residue 203 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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PDB	4y4p Structural insights into the role of rRNA modifications in protein synthesis and ribosome assembly.
Resolution	2.5 Å
Binding residue (original residue number in PDB)	D12 I86 P93 R94 G95
Binding residue (residue number reindexed from 1)	D12 I86 P93 R94 G95
Annotation score	4

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0003735	structural constituent of ribosome
GO:0019843	rRNA binding
GO:0070180	large ribosomal subunit rRNA binding

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005840	ribosome
GO:0015934	large ribosomal subunit
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

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Cellular Component

External links

PDB	RCSB:4y4p, PDBe:4y4p, PDBj:4y4p
PDBsum	4y4p
PubMed	25775268
UniProt	Q5SHP8\|RL14_THET8 Large ribosomal subunit protein uL14 (Gene Name=rplN)

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