Structure of PDB 8v87 Chain t Binding Site BS03

Receptor Information
>8v87 Chain t (length=285) Species: 1247190 (Saccharomyces cerevisiae BY4741) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LNSNPEILLRKRRNADRTRIERQELAKKKREEQIKKKRSNKNKFVRAESI
VAKTLATSREKERIKRVSILEDKKAKNETQHIASGKDFILKITEGLIREK
TTYDGKPALLFIVRVRGPLAVNIPNKAFKILSLLRLVETNTGVFVKLTKN
VYPLLKVIAPYVVIGKPSLSSIRSLIQKRGRIIYKEPHEIVLNDNNIVEE
QLGDHGIICVEDIIHEIATMGESFSVCNFFLQPFKLNREVSGFGSLNRLR
KIKQREAESRTRQFSNAATAPVIEVDIDSLLAKLN
Ligand information
>8v87 Chain 6 (length=87) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ccuucucaaacauucuguuugguagugagugauacucuuuggaguuaacu
ugaaauugcuggccuuuaggcgaacaauguucuuaaa
......<<<<<<...>>>>>>.....<<<<.<.<<<<....>>>>>.>>>
>..........<<<<..>>>>................
Receptor-Ligand Complex Structure
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PDB8v87 The DEAD-box ATPase Dbp10/DDX54 initiates peptidyl transferase center formation during 60S ribosome biogenesis.
Resolution2.66 Å
Binding residue
(original residue number in PDB)		K48 N51 E59 S60 K64 L66 T68 R70 K72 K76 R77 S79 I80 I93 A94 K97 R146 R148 G149 L151 V153 N154 I155 P156 N157 F160 T171 R275 F280 K288 R292 N303 A304
Binding residue
(residue number reindexed from 1)		K37 N40 E48 S49 K53 L55 T57 R59 K61 K65 R66 S68 I69 I82 A83 K86 R114 R116 G117 L119 V121 N122 I123 P124 N125 F128 T139 R238 F243 K251 R255 N266 A267
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003729 mRNA binding
GO:0003735 structural constituent of ribosome
GO:0005515 protein binding
GO:0042134 rRNA primary transcript binding
Biological Process
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000465 exonucleolytic trimming to generate mature 5'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0042254 ribosome biogenesis
GO:0042273 ribosomal large subunit biogenesis
Cellular Component
GO:0005634 nucleus
GO:0005730 nucleolus
GO:0022625 cytosolic large ribosomal subunit
GO:0030687 preribosome, large subunit precursor

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8v87, PDBe:8v87, PDBj:8v87
PDBsum8v87
PubMed38632236
UniProtP40693|RLP7_YEAST Ribosome biogenesis protein RLP7 (Gene Name=RLP7)

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