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Structure of PDB 6qx2 Chain r Binding Site BS03

Receptor Information
>6qx2 Chain r (length=484) Species: 1280 (Staphylococcus aureus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQG
MTPDKSYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQ
GNFGSMDGDGAAAMRYTEARMTKITLELLRDINKDTIDFIDNYDGNEREP
SVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLSLSKNPDISIA
ELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAVIEERGGGRQ
RIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVID
VRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLE
HQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVA
MESLQQRFKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELET
ILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLG
 
 
AttributeError		Python 3.6.8: /usr/bin/python3
Sun May 4 02:38:49 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1441     title=pdb2title(pdbid)
   1442     if bs.startswith("BS"):
=> 1443         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1444     else:
   1445         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6qx2', asym_id = 'r', bs = 'BS03', title = 'Structure-guided design of antibacterials that allosterically inhibit DNA gyrase.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6qx2', asym_id='r', bs='BS03', title='Structure-guided design of antibacterials that allosterically inhibit DNA gyrase.')
    893     print("CMD =", cmd, file=sys.stderr)
    894     print("STDOUT =", stdout.decode(), file=sys.stderr)
=>  895     print("STDERR =", stderr.decode(), file=sys.stderr)
    896 
    897     line     =stdout.decode().splitlines()[0]
builtin print = <built-in function print>, stderr = None, stderr.decode undefined, file undefined, sys = <module 'sys' (built-in)>, sys.stderr = <_io.TextIOWrapper name='<stderr>' mode='w' encoding='UTF-8'>

AttributeError: 'NoneType' object has no attribute 'decode'
      args = ("'NoneType' object has no attribute 'decode'",)
      with_traceback = <built-in method with_traceback of AttributeError object>