Structure of PDB 8uk2 Chain f Binding Site BS03

Receptor Information
>8uk2 Chain f (length=265) Species: 444185 (Simian rotavirus A strain RRV) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QNYGINLPITGSMDTAYANSTQEETFLTSTLCLYYPTEAATEINDNSWKD
TLSQLFLTKGWPTGSVYFKEYTDIASFSVDPQLYCDYNVVLMKYDATLQL
DMSELADLILNEWLCNPMDITLYYYQQTDEANKWISMGSSCTIKVCPLNT
QTLGIGCLTTDTATFEEVATAEKLVITDVVDGVNHKLDVTTATCTIRNCK
KLGPRENVAVIQVGGSDVLDITADPTTAPQTERMMRINWKKWWQVFYTVV
DYVNQIIQAMSKRSR
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain8uk2 Chain f Residue 404 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8uk2 The rotavirus VP5*/VP8* conformational transition permeabilizes membranes to Ca2+
Resolution8.0 Å
Binding residue
(original residue number in PDB)		G206 T214 E216
Binding residue
(residue number reindexed from 1)		G156 T164 E166
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology

View graph for
Cellular Component
External links
PDB RCSB:8uk2, PDBe:8uk2, PDBj:8uk2
PDBsum8uk2
PubMed38574119
UniProtP12476|VP7_ROTRH Outer capsid glycoprotein VP7

[Back to BioLiP]