Structure of PDB 6tmf Chain d Binding Site BS03

Receptor Information
>6tmf Chain d (length=582) Species: 2287 (Saccharolobus solfataricus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MRVAVINYDFCKPDKCNLECINFCPVDRSGGKAIELSEIVKGKPVIYEET
CIGCGICVKKCPYEAISIVNLPDELEGEVIHRYKVNGFKLFGLPTPKNNT
ILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYN
YFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELL
NMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDAPSSYLDVRERMN
MAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAA
RVGINNFLKGYLPAENMKIRPDEIKFMLKTKMKWTKIIKKLGDFQLVVDN
GEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQR
IFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSG
GELQKLYIAATLAKEADLYVLDAPSSYLDVEERYIVAKAIKRVTRERKAV
TFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLKTGMNEFLRELEV
TFRRDAETGRPRVNKIGSYLDRVQKERGDYYS
Ligand information
Ligand IDSF4
InChIInChI=1S/4Fe.4S
InChIKeyLJBDFODJNLIPKO-UHFFFAOYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7[S]12[Fe]3[S]4[Fe]1[S]5[Fe]2[S]3[Fe]45
CACTVS 3.385S1[Fe]S[Fe]1.S2[Fe]S[Fe]2
FormulaFe4 S4
NameIRON/SULFUR CLUSTER
ChEMBL
DrugBank
ZINC
PDB chain6tmf Chain d Residue 602 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB6tmf Molecular analysis of the ribosome recycling factor ABCE1 bound to the 30S post-splitting complex.
Resolution2.8 Å
Binding residue
(original residue number in PDB)		C11 K12 C16 C20 P44 C61 I66
Binding residue
(residue number reindexed from 1)		C11 K12 C16 C20 P44 C61 I66
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005506 iron ion binding
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016491 oxidoreductase activity
GO:0016887 ATP hydrolysis activity
GO:0043024 ribosomal small subunit binding
GO:0046872 metal ion binding
Biological Process
GO:0006413 translational initiation
GO:0006415 translational termination

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:6tmf, PDBe:6tmf, PDBj:6tmf
PDBsum6tmf
PubMed32064661
UniProtQ980K5

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