Structure of PDB 4dpv Chain Z Binding Site BS03

Receptor Information
>4dpv Chain Z (length=559) Species: 10788 (Canine parvovirus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GSGNGSGGGGGGGSGGVGISTGTFNNQTEFKFLENGWVEITANSSRLVHL
NMPESENYRRVVVNNMDKTAVNGNMALDDIHAQIVTPWSLVDANAWGVWF
NPGDWQLIVNTMSELHLVSFEQEIFNVVLKTVSEPPTKVYNNDLTASLMV
ALDSNNTMPFTPAAMRSETLGFYPWKPTIPTPWRYYFQWDRTLIPSHTGT
SGTPTNIYHGTDPDDVQFYTIENSVPVHLLRTGDEFATGTFFFDCKPCRL
THTWQTNRALGLPPFLNSLPQSEGATNFGDIGVQQDKRRGVTQMGNTNYI
TEATIMRPAEVGYSAPYYSFEASTQGPFKTPIAAGRGGAQTDENQAADGN
PRYAFGRQHGQKTTTTGETPERFTYIAHQDTGRYPEGDWIQNINFNLPVT
NDNVLLPTDPIGGKTGINYTNIFNTYGPLTALNNVPPVYPNGQIWDKEFD
TDLKPRLHVNAPFVCQNNCPGQLFVKVAPNLTNEYDPDASANMSRIVTYS
DFWWKGKLVFKAKLRASHTWNPIQQMSINVDNQFNYVPSNIGGMKIVYEK
SQLAPRKLY
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain4dpv Chain Z Residue 586 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB4dpv Canine parvovirus capsid structure, analyzed at 2.9 A resolution.
Resolution2.9 Å
Binding residue
(original residue number in PDB)		D237 D239
Binding residue
(residue number reindexed from 1)		D212 D214
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005198 structural molecule activity
Cellular Component
GO:0019028 viral capsid

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:4dpv, PDBe:4dpv, PDBj:4dpv
PDBsum4dpv
PubMed8969301
UniProtP17455|CAPSD_PAVCD Capsid protein VP1

[Back to BioLiP]