Structure of PDB 6nd4 Chain U Binding Site BS03

Receptor Information
>6nd4 Chain U (length=407) Species: 1247190 (Saccharomyces cerevisiae BY4741) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MKIKTIKRSADDYVPVKSTQESQMPRNLNPELHPFERAREYTKALNATKL
ERMFAKPFVGQLGYGHRDGVYAIAKNYGSLNKLATGSADGVIKYWNMSTR
EEFVSFKAHYGLVTGLCVTQNFMLSCSDDKTVKLWSINEGLIRTFDGESA
FQGIDSHRENSTFATGGAKIHLWDVNRLKPVSDLSWGADNITSLKFNQNE
TDILASTGSDNSIVLYDLRTNSPTQKIVQTMRTNAICWNPMEAFNFVTAN
EDHNAYYYDMRNLSRSLNVFKDHVSAVMDVDFSPTGDEIVTGSYDKSIRI
YKTNHGHSREIYHTKRMQHVFQVKYSMDSKYIISGSDDGNVRLWRSKAWE
RSNVKTTREKNKLEYDEKLKERFRHMPEIKRISRHRHVPQVIKKAQEIKN
IELSSIK
Ligand information
>6nd4 Chain 2 (length=146) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aggaucaggaaucgucacucuuugacucuucaaaagagccacugaaucca
acuugguugaugagucccauaaccuuuguacccagugagaaaccguaugg
cgcgaugaucuacccauggguggguacaaauggcagucugacaagu
..................................................
<<<<<.................<<<<<<<<<<..<.......<<<..>>>
.........>.<<<....>>>.>>>>>>>>.>>........>>>>>
Receptor-Ligand Complex Structure
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PDB6nd4 Conformational switches control early maturation of the eukaryotic small ribosomal subunit.
Resolution4.3 Å
Binding residue
(original residue number in PDB)		S18 T19 A55 K56 F58 I342 H344 E390
Binding residue
(residue number reindexed from 1)		S18 T19 A55 K56 F58 I311 H313 E359
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Biological Process
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0006364 rRNA processing
GO:0030490 maturation of SSU-rRNA
GO:0042254 ribosome biogenesis
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005730 nucleolus
GO:0030686 90S preribosome
GO:0032040 small-subunit processome
GO:1990904 ribonucleoprotein complex

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Biological Process
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Cellular Component
External links
PDB RCSB:6nd4, PDBe:6nd4, PDBj:6nd4
PDBsum6nd4
PubMed31206356
UniProtP33750|DCA13_YEAST Protein SOF1 (Gene Name=SOF1)

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