Structure of PDB 2dyr Chain T Binding Site BS03

Receptor Information
>2dyr Chain T (length=84) Species: 9913 (Bos taurus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ASAAKGDHGGTGARTWRFLTFGLALPSVALCTLNSWLHSGHRERPAFIPY
HHLRIRTKPFSWGDGNHTFFHNPRVNPLPTGYEK
Ligand information
Ligand IDPEK
InChIInChI=1S/C43H78NO8P/c1-3-5-7-9-11-13-15-17-19-20-22-24-26-28-30-32-34-36-43(46)52-41(40-51-53(47,48)50-38-37-44)39-49-42(45)35-33-31-29-27-25-23-21-18-16-14-12-10-8-6-4-2/h11,13,17,19,22,24,28,30,41H,3-10,12,14-16,18,20-21,23,25-27,29,31-40,44H2,1-2H3,(H,47,48)/b13-11-,19-17-,24-22-,30-28-/t41-/m1/s1
InChIKeyANRKEHNWXKCXDB-BHFWLYLHSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0CCCCCCCCCCCCCCCCCC(=O)OC[C@H](CO[P@](=O)(O)OCCN)OC(=O)CCC\C=C/C\C=C/C\C=C/C\C=C/CCCCC
CACTVS 3.341CCCCCCCCCCCCCCCCCC(=O)OC[CH](CO[P](O)(=O)OCCN)OC(=O)CCCC=CCC=CCC=CCC=CCCCCC
ACDLabs 10.04O=C(OCC(OC(=O)CCC\C=C/C\C=C/C\C=C/C\C=C/CCCCC)COP(=O)(OCCN)O)CCCCCCCCCCCCCCCCC
CACTVS 3.341CCCCCCCCCCCCCCCCCC(=O)OC[C@H](CO[P@@](O)(=O)OCCN)OC(=O)CCC\C=C/C/C=C\C\C=C/C/C=C\CCCCC
OpenEye OEToolkits 1.5.0CCCCCCCCCCCCCCCCCC(=O)OCC(COP(=O)(O)OCCN)OC(=O)CCCC=CCC=CCC=CCC=CCCCCC
FormulaC43 H78 N O8 P
Name(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE;
PHOSPHATIDYLETHANOLAMINE;
2-ARACHIDONOYL-1-STEAROYL-SN-GLYCEROL-3-PHOSPHOETHANOLAMINE
ChEMBL
DrugBank
ZINCZINC000085581337
PDB chain2dyr Chain P Residue 1265 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB2dyr Structures and physiological roles of 13 integral lipids of bovine heart cytochrome c oxidase
Resolution1.8 Å
Binding residue
(original residue number in PDB)		R17 G22
Binding residue
(residue number reindexed from 1)		R17 G22
Annotation score4
Enzymatic activity
Enzyme Commision number 1.9.3.1: Transferred entry: 7.1.1.9.
Gene Ontology
Cellular Component
GO:0005743 mitochondrial inner membrane

View graph for
Cellular Component
External links
PDB RCSB:2dyr, PDBe:2dyr, PDBj:2dyr
PDBsum2dyr
PubMed17332748
UniProtP07471|CX6A2_BOVIN Cytochrome c oxidase subunit 6A2, mitochondrial (Gene Name=COX6A2)

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