Structure of PDB 9cf0 Chain P Binding Site BS03

Receptor Information
>9cf0 Chain P (length=722) Species: 35722,83333 [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PSKRVITIKTTIKGIWKYDYRQPLYDLVHTTNLLVTHTYAFTKYIFLKEL
ATDENFAFNELITKDFFVEVFLSLVSAKAGNSERLKDTTKRYRSLIGKHK
DAYFEDAKYTPISLAYAQQIALYECAKVQTAYFNNMKAHFGNRLRALINK
LFKKKEKVESLTKEMEANNFSIKEIKQAIRKNVYQPCNQVKLAITKKNMP
ESGLLDDKSVTQLNEFFSMYAVDYTFQKESIFYDVVANPEKHFKAFYKLA
QLSEAYEVKPFACFPLRRTFIPCYMTVDSKILNYHILKNKKVLKMDEKFN
AWGRVVNLERKAFKSQGCKKTLHFQGTLETDGVGVSILKQNTDTNRKYIE
KLEDAELKQTLGKCVLMDPGRRDLLYCMKETSRADKKEIMIFTKNDRSKC
SRHFRRLRKLLQPSQIREAETYLSGFATKSVNMEKFVEYIQARASVKDIL
YEYYGNETAKSITEFYPESQFDFKVDQKCNLYYENLFVAKIRGFYPQPEH
EPNDITLKSHMYHTYLQIMLNQKHISERLNSEKRRKIEDLAKAILEQPHE
SGHKTTISSLLGKLRLLPFRKMKFSTKLFSDNNDRKLVKNIKKKFGADAV
LVLGNWSAPNTKYQDPTRNKGLRRMLKKNGFPLYLIDEFRTSSFCPKCES
DLEKFKVIPNPRPHNQEKQPKVLCHGLLRCKNMSCLEQQNQRLWNRDQAA
VLNFRKILNCLRETKQRPPLFS
Ligand information
>9cf0 Chain W (length=53) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uccaccaaaguuaucgcuuuggucaauuaaugcagagcaacauccagcaa
aca
...<<<<<<<......>>>>>>>.......<<<...>>>...........
...
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB9cf0 Structural insights into the diversity and DNA cleavage mechanism of Fanzor.
Resolution3.47 Å
Binding residue
(original residue number in PDB)
V107 I108 T109 I110 K111 T112 T113 H241 R247 N251 K361 P367 R370 Y376 K413 Q418 E431 S438 R489 R490 M496 S500 K505 D514 R520 R524 L525 L529 N598 Y600 L604 F605 K608 R646 L682 L685 P686 K689 K695 L696 R703 P727 K746 K774 P779 R780 G794 N812 R814 L815 W816 N817 Q820 L824 R827
Binding residue
(residue number reindexed from 1)
V5 I6 T7 I8 K9 T10 T11 H139 R145 N149 K259 P265 R268 Y274 K311 Q316 E329 S336 R371 R372 M378 S382 K387 D396 R402 R406 L407 L411 N480 Y482 L486 F487 K490 R528 L564 L567 P568 K571 K577 L578 R585 P609 K628 K656 P661 R662 G676 N690 R692 L693 W694 N695 Q698 L702 R705
External links
PDB RCSB:9cf0, PDBe:9cf0, PDBj:9cf0
PDBsum9cf0
PubMed39208796
UniProtA0A0B7NJM7;
P0AEX9|MALE_ECOLI Maltose/maltodextrin-binding periplasmic protein (Gene Name=malE)

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