Structure of PDB 6id1 Chain O Binding Site BS03

Receptor Information
>6id1 Chain O (length=290) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NWEDADFPILCQTCLGENPYIRMTKEKYGKECKICARPFTVFRWCPGVRM
RFKKTEVCQTCSKLKNVCQTCLLDLEYGLPIQVRDAGLSFKDDMPKSDVN
KEYYTQNMEREISNSDGTRPVGMLGKATSTSDMLLKLARTTPYYKRNRPH
ICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGINDPVADKL
LKRASTMPRLDPPEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITV
VQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain6id1 Chain O Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB6id1 Structures of the human spliceosomes before and after release of the ligated exon.
Resolution2.86 Å
Binding residue
(original residue number in PDB)		C27 C81 C84
Binding residue
(residue number reindexed from 1)		C14 C68 C71
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
GO:0005515 protein binding
GO:0017070 U6 snRNA binding
GO:0036002 pre-mRNA binding
GO:0046872 metal ion binding
GO:0048306 calcium-dependent protein binding
Biological Process
GO:0000398 mRNA splicing, via spliceosome
GO:0006397 mRNA processing
GO:0008380 RNA splicing
GO:0033120 positive regulation of RNA splicing
GO:0042307 positive regulation of protein import into nucleus
GO:0045292 mRNA cis splicing, via spliceosome
GO:0046827 positive regulation of protein export from nucleus
GO:0071466 cellular response to xenobiotic stimulus
Cellular Component
GO:0000974 Prp19 complex
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005681 spliceosomal complex
GO:0005737 cytoplasm
GO:0071006 U2-type catalytic step 1 spliceosome
GO:0071007 U2-type catalytic step 2 spliceosome
GO:0071013 catalytic step 2 spliceosome

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6id1, PDBe:6id1, PDBj:6id1
PDBsum6id1
PubMed30728453
UniProtQ9NW64|RBM22_HUMAN Pre-mRNA-splicing factor RBM22 (Gene Name=RBM22)

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