Structure of PDB 8fai Chain K Binding Site BS03

Receptor Information
>8fai Chain K (length=68) Species: 358 (Agrobacterium tumefaciens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GGGTDPATMVNNICTFILGPFGQSLAVLGIVAIGISWMFGRASLGLVAGV
VGGIVIMFGASFLGKTLT
Ligand information
Ligand IDXL0
InChIInChI=1S/C40H75O10P/c1-3-5-7-9-11-13-15-17-18-20-22-24-26-28-30-32-40(44)50-38(36-49-51(45,46)48-34-37(42)33-41)35-47-39(43)31-29-27-25-23-21-19-16-14-12-10-8-6-4-2/h14,16-18,37-38,41-42H,3-13,15,19-36H2,1-2H3,(H,45,46)/b16-14-,18-17-/t37-,38-/m1/s1
InChIKeyVCYYBLIRAQBPTM-CTDKCSBDSA-N
SMILES
SoftwareSMILES
ACDLabs 12.01O=C(OC(COP(O)(=O)OCC(O)CO)COC(=O)CCCCCCC/C=C\CCCCCC)CCCCCCC/C=C\CCCCCCCC
CACTVS 3.385CCCCCCCCC=CCCCCCCCC(=O)O[CH](COC(=O)CCCCCCCC=CCCCCCC)CO[P](O)(=O)OC[CH](O)CO
CACTVS 3.385CCCCCCCC\C=C/CCCCCCCC(=O)O[C@H](COC(=O)CCCCCCC\C=C/CCCCCC)CO[P](O)(=O)OC[C@H](O)CO
OpenEye OEToolkits 2.0.7CCCCCCCC/C=C\CCCCCCCC(=O)O[C@H](COC(=O)CCCCCCC/C=C\CCCCCC)COP(=O)(O)OC[C@@H](CO)O
OpenEye OEToolkits 2.0.7CCCCCCCCC=CCCCCCCCC(=O)OC(COC(=O)CCCCCCCC=CCCCCCC)COP(=O)(O)OCC(CO)O
FormulaC40 H75 O10 P
Name(7Z,19R,22S,25R)-22,25,26-trihydroxy-16,22-dioxo-17,21,23-trioxa-22lambda~5~-phosphahexacos-7-en-19-yl (9Z)-octadec-9-enoate
ChEMBL
DrugBank
ZINC
PDB chain8fai Chain O Residue 202 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8fai Cryo-EM structure of the Agrobacterium tumefaciens T4SS-associated T-pilus reveals stoichiometric protein-phospholipid assembly.
Resolution3.0 Å
Binding residue
(original residue number in PDB)
L75 L78 S86 F89
Binding residue
(residue number reindexed from 1)
L25 L28 S36 F39
Annotation score1
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:8fai, PDBe:8fai, PDBj:8fai
PDBsum8fai
PubMed36870333
UniProtP17792|VIRB2_AGRFC Protein virB2 (Gene Name=virB2)

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