Structure of PDB 8ooq Chain J Binding Site BS03

Receptor Information
>8ooq Chain J (length=447) Species: 523845 (Methanothermococcus thermolithotrophicus DSM 2095) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
STVEQVLEYVKSNNVKFMRFQFVDILGVPKNVAFPIKAGEKGIEELRDVL
ENGLYFDGSSIEGFVGINESDMMLKPDLSTFSVLPWRPSEKSVARVICDV
YTTKGKPFEGDPRGCLKRVMEEFKKEFNGEYFVGPEPEFFLLKKDPHNPH
KYIPADDGGYFDLEPMDEAPDIRRDIVFALENLGFHVEASHHEVAPGQHE
VDFKFDDALKTADSVITFKTTIKTIAEQHGLKATFMPKPFFGMNGSGMHC
HQSIWLNGEPSFYDENAPYQLSETCMNYVAGILKHAKAIVAITNPTVNSY
KRLVPGYEAPVNIAWANSNRSAIIRVPAARGKGTRIEFRAPDPSCNPYLA
FTVMLAAGLDGVKNKLDAPEPVERNIFAMSEAEKKELGIESVPANLKAAL
DELENNDVLKNALGKHIFESFLEIKNAEWDSFRTSVTDWETTAYLKI
Ligand information
Ligand IDAKG
InChIInChI=1S/C5H6O5/c6-3(5(9)10)1-2-4(7)8/h1-2H2,(H,7,8)(H,9,10)
InChIKeyKPGXRSRHYNQIFN-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04O=C(O)C(=O)CCC(=O)O
OpenEye OEToolkits 1.7.6C(CC(=O)O)C(=O)C(=O)O
CACTVS 3.385OC(=O)CCC(=O)C(O)=O
FormulaC5 H6 O5
Name2-OXOGLUTARIC ACID
ChEMBLCHEMBL1686
DrugBankDB08845
ZINCZINC000001532519
PDB chain8ooq Chain J Residue 502 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB8ooq Differences in the regulation mechanisms of the glutamine synthetase from methanogenic archaea unveiled by structural investigations.
Resolution2.91 Å
Binding residue
(original residue number in PDB)		P171 R174 R175 S191
Binding residue
(residue number reindexed from 1)		P170 R173 R174 S190
Annotation score1
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Fri Nov 15 11:27:17 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '8ooq', asym_id = 'J', bs = 'BS03', title = 'Differences in the regulation mechanisms of the ...c archaea unveiled by structural investigations. '
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='8ooq', asym_id='J', bs='BS03', title='Differences in the regulation mechanisms of the ...c archaea unveiled by structural investigations. ')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003824,0004356,0006542', uniprot = '', pdbid = '8ooq', asym_id = 'J'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003824,0004356,0006542', uniprot='', pdbid='8ooq', asym_id='J')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>