Structure of PDB 7o0u Chain H1 Binding Site BS03

Receptor Information
>7o0u Chain H1 (length=62) Species: 1379270 (Gemmatimonas phototrophica) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MMEYIDGAQIALYAFWLFFFGLIIYLRREDKREGYPLESPQGPRDGWPKG
APKKTYVHRDHG
Ligand information
Ligand IDV7B
InChIInChI=1S/C43H80O15/c1-29(2)21-17-13-9-5-7-11-15-19-23-34(46)53-27-31(55-35(47)24-20-16-12-8-6-10-14-18-22-30(3)4)28-54-42-40(52)38(50)41(33(26-45)57-42)58-43-39(51)37(49)36(48)32(25-44)56-43/h29-33,36-45,48-52H,5-28H2,1-4H3/t31-,32-,33-,36-,37+,38-,39-,40-,41-,42-,43-/m1/s1
InChIKeyFZSILUNLAKMVHD-KBRRZRKCSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CC(C)CCCCCCCCCCC(=O)OCC(COC1C(C(C(C(O1)CO)OC2C(C(C(C(O2)CO)O)O)O)O)O)OC(=O)CCCCCCCCCCC(C)C
OpenEye OEToolkits 2.0.7CC(C)CCCCCCCCCCC(=O)OC[C@H](CO[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O)O)O)OC(=O)CCCCCCCCCCC(C)C
CACTVS 3.385CC(C)CCCCCCCCCCC(=O)OC[CH](CO[CH]1O[CH](CO)[CH](O[CH]2O[CH](CO)[CH](O)[CH](O)[CH]2O)[CH](O)[CH]1O)OC(=O)CCCCCCCCCCC(C)C
CACTVS 3.385CC(C)CCCCCCCCCCC(=O)OC[C@H](CO[C@@H]1O[C@H](CO)[C@@H](O[C@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)[C@H](O)[C@H]1O)OC(=O)CCCCCCCCCCC(C)C
FormulaC43 H80 O15
Name[(2~{S})-3-[(2~{R},3~{R},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-5-[(2~{R},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3,4-bis(oxidanyl)oxan-2-yl]oxy-2-(12-methyltridecanoyloxy)propyl] 12-methyltridecanoate
ChEMBL
DrugBank
ZINC
PDB chain7o0u Chain ag Residue 103 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB7o0u 2.4- angstrom structure of the double-ring Gemmatimonas phototrophica photosystem.
Resolution2.35 Å
Binding residue
(original residue number in PDB)
Y4 Q9 Y13 F20
Binding residue
(residue number reindexed from 1)
Y4 Q9 Y13 F20
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
Biological Process
GO:0019684 photosynthesis, light reaction
Cellular Component
GO:0016020 membrane
GO:0030077 plasma membrane light-harvesting complex

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:7o0u, PDBe:7o0u, PDBj:7o0u
PDBsum7o0u
PubMed35171663
UniProtA0A143BJ28

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