Structure of PDB 6rkc Chain H Binding Site BS03

Receptor Information
>6rkc Chain H (length=372) Species: 519849 (Ureaplasma urealyticum serovar 7 str. ATCC 27819) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KKIITSESVGAGHPDKICDQISDAILDECLSQDQNSRVACEVLACNRLIV
IAGEITTHAYVDVVKTAWEIIKPLGYDENDFTIISNVNKQSVDIAQSVDK
TNKNLIGAGDQGIVFGYACDETPQYMPLTSVLAHELLKEIERQRRSKEFI
KIQADMKSQVSIDYSNSTPLIETMLVSIQHDEDYDVEYFNKKVSAIMEQI
AKKYNLNTNFKKIINSSGRFVIGGPIGDTGLTGRKIIVDTYGGVGHHGGG
AFSGKDPTKVDRSASYFARWIAKNVVAAKLAKQCEIQLAFAIGQPQPVAM
YVNTFNTNLIDETKIFEAIKKSFNFDIKTFINDLNLWTTKYLPVATYGHF
GRDDLDLSWEKLNKVEDLIKNS
Ligand information
Ligand IDPPK
InChIInChI=1S/H6NO9P3/c2-11(3,4)1-12(5,6)10-13(7,8)9/h(H2,7,8,9)(H4,1,2,3,4,5,6)
InChIKeyPELPUMGXMYVGSQ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341O[P](O)(=O)N[P](O)(=O)O[P](O)(O)=O
ACDLabs 10.04O=P(OP(=O)(O)O)(O)NP(=O)(O)O
OpenEye OEToolkits 1.5.0N(P(=O)(O)O)P(=O)(O)OP(=O)(O)O
OpenEye OEToolkits 1.5.0N(P(=O)(O)O)[P@](=O)(O)OP(=O)(O)O
CACTVS 3.341O[P](O)(=O)N[P@@](O)(=O)O[P](O)(O)=O
FormulaH6 N O9 P3
Name(DIPHOSPHONO)AMINOPHOSPHONIC ACID
ChEMBL
DrugBankDB03075
ZINC
PDB chain6rkc Chain G Residue 409 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6rkc The interdimeric interface controls function and stability of Ureaplasma urealiticum methionine S-adenosyltransferase.
Resolution2.56 Å
Binding residue
(original residue number in PDB)		H16 D18 K160 R237 K238
Binding residue
(residue number reindexed from 1)		H13 D15 K157 R234 K235
Annotation score2
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sat Nov 16 01:58:43 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6rkc', asym_id = 'H', bs = 'BS03', title = 'The interdimeric interface controls function and...sma urealiticum methionine S-adenosyltransferase.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6rkc', asym_id='H', bs='BS03', title='The interdimeric interface controls function and...sma urealiticum methionine S-adenosyltransferase.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0004478,0005524,0006556', uniprot = '', pdbid = '6rkc', asym_id = 'H'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0004478,0005524,0006556', uniprot='', pdbid='6rkc', asym_id='H')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>