Structure of PDB 3o8o Chain H Binding Site BS03

Receptor Information
>3o8o Chain H (length=763) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PQKAIAVMTSGGDAPGMNSNVRAIVRSAIFKGCRAFVVMEGYEGLVRGGP
EYIKEFHWEDVRGWSAEGGTNIGTARCMEFKKREGRLLGAQHLIEAGVDA
LIVCGGDGSLTGADLFRSEWPSLIEELLKTNRISNEQYERMKHLNICGTV
GSIDNDMSTTDATIGAYSALDRICKAIDYVEATANSHSRAFVVEVMGRNC
GWLALLAGIATSADYIFIPEKPATSSEWQDQMCDIVSKHRSRGKRTTIVV
VAEGAIAADLTPISPSDVHKVLVDRLGLDTRITTLGHVQRGGTAVAYDRI
LATLQGLEAVNAVLESTPDTPSPLIAVNENKIVRKPLMESVKLTKAVAEA
IQAKDFKRAMSLRDTEFIEHLNNFMAINSADHNEPKLPKDKRLKIAIVNV
GAPAGGINSAVYSMATYCMSQGHRPYAIYNGWSGLARHESVRSLNWKDML
GWQSRGGSEIGTNRVTPEEADLGMIAYYFQKYEFDGLIIVGGFEAFESLH
QLERARESYPAFRIPMVLIPATLSNNVPGTEYSLGSDTALNALMEYCDVV
KQSASSTRGRAFVVDCQGGNSGYLATYASLAVGAQVSYVPEEGISLEQLS
EDIEYLAQSFEKAEGRGRFGKLILKSTNASKALSATKLAEVITAEADGRF
DAKPAYPGHVQQGGLPSPIDRTRATRMAIKAVGFIKDNQAAIAEARAAEE
NFNADDKTISDTAAVVGVKGSHVVYNSIRQLYDYETEVSMRMPKVIHWQA
TRLIADHLVGRKR
Ligand information
Ligand IDFDP
InChIInChI=1S/C6H14O12P2/c7-2-6(18-20(13,14)15)5(9)4(8)3(17-6)1-16-19(10,11)12/h3-5,7-9H,1-2H2,(H2,10,11,12)(H2,13,14,15)/t3-,4-,5+,6+/m1/s1
InChIKeyYXWOAJXNVLXPMU-ZXXMMSQZSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04O=P(OC1(OC(C(O)C1O)COP(=O)(O)O)CO)(O)O
OpenEye OEToolkits 1.5.0C([C@@H]1[C@H]([C@@H]([C@](O1)(CO)OP(=O)(O)O)O)O)OP(=O)(O)O
CACTVS 3.341OC[C]1(O[CH](CO[P](O)(O)=O)[CH](O)[CH]1O)O[P](O)(O)=O
CACTVS 3.341OC[C@]1(O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@@H]1O)O[P](O)(O)=O
OpenEye OEToolkits 1.5.0C(C1C(C(C(O1)(CO)OP(=O)(O)O)O)O)OP(=O)(O)O
FormulaC6 H14 O12 P2
Name2,6-di-O-phosphono-beta-D-fructofuranose;
FRUCTOSE-2,6-DIPHOSPHATE;
2,6-di-O-phosphono-beta-D-fructose;
2,6-di-O-phosphono-D-fructose;
2,6-di-O-phosphono-fructose
ChEMBL
DrugBank
ZINCZINC000004228295
PDB chain3o8o Chain H Residue 8 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB3o8o The Crystal Structures of Eukaryotic Phosphofructokinases from Baker's Yeast and Rabbit Skeletal Muscle.
Resolution2.9 Å
Binding residue
(original residue number in PDB)		R658 T716 L717 S718 Q761 Q856 R935
Binding residue
(residue number reindexed from 1)		R464 T522 L523 S524 Q567 Q662 R741
Annotation score3
Enzymatic activity
Catalytic site (original residue number in PDB) G206 R270 C271 D301 G345 S346 D348 D350 R392
Catalytic site (residue number reindexed from 1) G12 R76 C77 D107 G151 S152 D154 D156 R198
Enzyme Commision number 2.7.1.11: 6-phosphofructokinase.
Gene Ontology
Molecular Function
GO:0003872 6-phosphofructokinase activity
GO:0005524 ATP binding
Biological Process
GO:0006002 fructose 6-phosphate metabolic process
GO:0006096 glycolytic process
Cellular Component
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
View graph for
Cellular Component
External links
PDB RCSB:3o8o, PDBe:3o8o, PDBj:3o8o
PDBsum3o8o
PubMed21241708
UniProtP16862|PFKA2_YEAST ATP-dependent 6-phosphofructokinase subunit beta (Gene Name=PFK2)

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