Structure of PDB 1a3b Chain H Binding Site BS03
Receptor Information
>1a3b Chain H (length=251) Species:
9606
(Homo sapiens) [
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IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPW
DKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDI
ALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETKGQ
PSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSG
GPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQ
F
Ligand information
Ligand ID
T29
InChI
InChI=1S/C22H34BN5O5S/c1-2-19(29)26-16(14-15-8-4-3-5-9-15)21(31)28-12-6-10-17(28)20(30)27-18(23(32)33)11-7-13-34-22(24)25/h3-5,8-9,16-18,32-33H,2,6-7,10-14H2,1H3,(H3,24,25)(H,26,29)(H,27,30)/t16-,17+,18+/m1/s1
InChIKey
IRTXHWTZQUYIAV-SQNIBIBYSA-N
SMILES
Software
SMILES
OpenEye OEToolkits 1.5.0
B(C(CCCSC(=N)N)NC(=O)C1CCCN1C(=O)C(Cc2ccccc2)NC(=O)CC)(O)O
OpenEye OEToolkits 1.5.0
B([C@H](CCCSC(=N)N)NC(=O)[C@@H]1CCCN1C(=O)[C@@H](Cc2ccccc2)NC(=O)CC)(O)O
CACTVS 3.341
CCC(=O)N[CH](Cc1ccccc1)C(=O)N2CCC[CH]2C(=O)N[CH](CCCSC(N)=N)B(O)O
CACTVS 3.341
CCC(=O)N[C@H](Cc1ccccc1)C(=O)N2CCC[C@H]2C(=O)N[C@@H](CCCSC(N)=N)B(O)O
ACDLabs 10.04
O=C(NC(B(O)O)CCCSC(=[N@H])N)C2N(C(=O)C(NC(=O)CC)Cc1ccccc1)CCC2
Formula
C22 H34 B N5 O5 S
Name
TRI166 (BIFUNCTIONAL BORONATE INHIBITOR)
ChEMBL
DrugBank
ZINC
ZINC000195751183
PDB chain
1a3b Chain H Residue 1 [
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Receptor-Ligand Complex Structure
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PDB
1a3b
Bifunctional peptide boronate inhibitors of thrombin: crystallographic analysis of inhibition enhanced by linkage to an exosite 1 binding peptide.
Resolution
1.8 Å
Binding residue
(original residue number in PDB)
H57 Y60A W60D L99 I174 D189 A190 G193 S195 W215 G216
Binding residue
(residue number reindexed from 1)
H43 Y47 W50 L96 I173 D193 A194 G197 S199 W221 G222
Annotation score
1
Enzymatic activity
Enzyme Commision number
3.4.21.5
: thrombin.
Gene Ontology
Molecular Function
GO:0004252
serine-type endopeptidase activity
GO:0005509
calcium ion binding
Biological Process
GO:0006508
proteolysis
GO:0007596
blood coagulation
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Molecular Function
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Biological Process
External links
PDB
RCSB:1a3b
,
PDBe:1a3b
,
PDBj:1a3b
PDBsum
1a3b
PubMed
9772168
UniProt
P00734
|THRB_HUMAN Prothrombin (Gene Name=F2)
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