Structure of PDB 8oo9 Chain G Binding Site BS03

Receptor Information
>8oo9 Chain G (length=439) Species: 209285 (Thermochaetoides thermophila) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QPKLLNCQLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTVQSISVMAY
LAERYDIWGPFLVVAPASTLHNWQQEVSKFVPDFKVLPYWGTAADRKVLR
KFWDRKHTTYKKDSPFHVMITSYQLVVSDVAYFQKMKWQYMILDEAQAIK
SSQSSRWKCLLGFHCRNRLLLTGTPIQNNMQELWALLHFIMPSLFDSQLK
RLHMILKPFMLRRVKKHVQKELGDKIEIDVFCELSYRQRAMYQSLRNQIS
IMDTLMNLVMQFRKVCNHPDLFERAPSMARFVTDSGKLAKLDELLRELKE
GGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRDTVADFQT
RPEIFIFLLSTRAGGLGINLTTADTVIFYDSDWNPTIDSQAMDRAHRLGQ
TKQVTVYRLITRGTIEERIRKRALQKEEVQRVVITGTGS
Ligand information
Ligand IDADP
InChIInChI=1S/C10H15N5O10P2/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(24-10)1-23-27(21,22)25-26(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1
InChIKeyXTWYTFMLZFPYCI-KQYNXXCUSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)OP(=O)(O)O)O)O)N
CACTVS 3.341Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O
ACDLabs 10.04O=P(O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O
CACTVS 3.341Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@@](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O
OpenEye OEToolkits 1.5.0c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)O)O)O)N
FormulaC10 H15 N5 O10 P2
NameADENOSINE-5'-DIPHOSPHATE
ChEMBLCHEMBL14830
DrugBankDB16833
ZINCZINC000012360703
PDB chain8oo9 Chain G Residue 2001 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8oo9 Hexasome-INO80 complex reveals structural basis of noncanonical nucleosome remodeling.
Resolution3.2 Å
Binding residue
(original residue number in PDB)		C970 Q971 Q976 G1000 G1002 K1003 T1004 V1005 N1636 R1664 L1665
Binding residue
(residue number reindexed from 1)		C7 Q8 Q13 G37 G39 K40 T41 V42 N369 R397 L398
Annotation score4
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sat Nov 16 07:42:22 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '8oo9', asym_id = 'G', bs = 'BS03', title = 'Hexasome-INO80 complex reveals structural basis of noncanonical nucleosome remodeling.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='8oo9', asym_id='G', bs='BS03', title='Hexasome-INO80 complex reveals structural basis of noncanonical nucleosome remodeling.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003677,0005524,0005634,0006281,0006338,0006351,0031011,0140658', uniprot = '', pdbid = '8oo9', asym_id = 'G'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003677,0005524,0005634,0006281,0006338,0006351,0031011,0140658', uniprot='', pdbid='8oo9', asym_id='G')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>