Structure of PDB 8de6 Chain G Binding Site BS03

Receptor Information
>8de6 Chain G (length=401) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SHIDCRMSPWSEWSQCDPCLRQMFRSRSIEVFGQFNGKRCTDAVGDRRQC
VPTEPCEDAEDDCGNDFQCSTGRCIKMRLRCNGDNDCGDFSDEDDCESEP
RPPCRDRVVEESELARTAGYGINILGMDPLSTPFDNEFYNGLCNRDRDGN
TLTYYRRPWNVASLIYETKGEKNFRTEHYEEQIEASYSSKKEKMFLHVKG
EIHLGRFVMRNRDVVLTTTFVDDIKALPTTYEKGEYFAFLETYGTHYSSS
GSLGGLYELIYVLDKASMKRKVNITSENLIDDVVSLIRGGTRKYAFELKE
KLLRGTVIDVTDFVNWASSINDAPVLISQKLSPIYNLVPVKMKNAHLKKQ
NLERAIEDYINEFSVRKCHTCQNGGTVILMDGKCLCACPFKFEGIACEIS
K
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain8de6 Chain G Residue 604 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8de6 The neoepitope of the complement C5b-9 Membrane Attack Complex is formed by proximity of adjacent ancillary regions of C9.
Resolution3.2 Å
Binding residue
(original residue number in PDB)		N99 D101 D103 D109 E110
Binding residue
(residue number reindexed from 1)		N82 D84 D86 D92 E93
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Biological Process
GO:0006955 immune response
Cellular Component
GO:0005579 membrane attack complex

View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8de6, PDBe:8de6, PDBj:8de6
PDBsum8de6
PubMed36639734
UniProtP02748|CO9_HUMAN Complement component C9 (Gene Name=C9)

[Back to BioLiP]