Structure of PDB 9boq Chain F Binding Site BS03

Receptor Information
>9boq Chain F (length=736) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIV
LSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDD
TVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPS
PYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVE
LPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLING
PEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVE
RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGI
PDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQ
AIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEV
PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPG
CGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAP
CVLFFDELDSIAKARGGGGAADRVINQILTEMDGMSTKKNVFIIGATNRP
DIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLA
KMTNGFSGADLTEICQRACKLAIRESIESEIRRERERPVPEIRRDHFEEA
MRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPS
Ligand information
Ligand IDXKM
InChIInChI=1S/C30H36F2N6O3S/c1-4-5-8-21(2)42-29-36-35-28(38(29)23-9-6-13-33-19-23)20-41-24-17-26(31)25(27(32)18-24)10-7-16-40-30(39)34-22-11-14-37(3)15-12-22/h6,9,13,17-19,21-22H,4-5,8,11-12,14-16,20H2,1-3H3,(H,34,39)/t21-/m0/s1
InChIKeyOSNNCYCOPWLGKG-NRFANRHFSA-N
SMILES
SoftwareSMILES
CACTVS 3.385CCCC[C@H](C)Sc1nnc(COc2cc(F)c(C#CCOC(=O)NC3CCN(C)CC3)c(F)c2)n1c4cccnc4
CACTVS 3.385CCCC[CH](C)Sc1nnc(COc2cc(F)c(C#CCOC(=O)NC3CCN(C)CC3)c(F)c2)n1c4cccnc4
OpenEye OEToolkits 2.0.7CCCCC(C)Sc1nnc(n1c2cccnc2)COc3cc(c(c(c3)F)C#CCOC(=O)NC4CCN(CC4)C)F
ACDLabs 12.01CN1CCC(NC(=O)OCC#Cc2c(F)cc(OCc3nnc(SC(C)CCCC)n3c3cccnc3)cc2F)CC1
OpenEye OEToolkits 2.0.7CCCC[C@H](C)Sc1nnc(n1c2cccnc2)COc3cc(c(c(c3)F)C#CCOC(=O)NC4CCN(CC4)C)F
FormulaC30 H36 F2 N6 O3 S
Name3-(2,6-difluoro-4-{[(4P)-5-{[(2S)-hexan-2-yl]sulfanyl}-4-(pyridin-3-yl)-4H-1,2,4-triazol-3-yl]methoxy}phenyl)prop-2-yn-1-yl (1-methylpiperidin-4-yl)carbamate
ChEMBL
DrugBank
ZINC
PDB chain9boq Chain F Residue 903 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB9boq Mechanism of allosteric inhibition of human p97/VCP ATPase and its disease mutant by triazole inhibitors.
Resolution3.33 Å
Binding residue
(original residue number in PDB)
P496 V497 P500 L504 M508 P510 S511 C535 K615 N616 F618
Binding residue
(residue number reindexed from 1)
P475 V476 P479 L483 M487 P489 S490 C514 K589 N590 F592
Annotation score1
External links
PDB RCSB:9boq, PDBe:9boq, PDBj:9boq
PDBsum9boq
PubMed39122922
UniProtP55072|TERA_HUMAN Transitional endoplasmic reticulum ATPase (Gene Name=VCP)

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