Structure of PDB 8uv2 Chain F Binding Site BS03

Receptor Information
>8uv2 Chain F (length=743) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIV
LSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDD
TVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPS
PYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVE
LPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLING
PEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVE
RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGI
PDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQ
AIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEV
PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPG
CGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAP
CVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIG
ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD
LEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQDPVPEIR
RDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPS
Ligand information
Ligand IDXKM
InChIInChI=1S/C30H36F2N6O3S/c1-4-5-8-21(2)42-29-36-35-28(38(29)23-9-6-13-33-19-23)20-41-24-17-26(31)25(27(32)18-24)10-7-16-40-30(39)34-22-11-14-37(3)15-12-22/h6,9,13,17-19,21-22H,4-5,8,11-12,14-16,20H2,1-3H3,(H,34,39)/t21-/m0/s1
InChIKeyOSNNCYCOPWLGKG-NRFANRHFSA-N
SMILES
SoftwareSMILES
CACTVS 3.385CCCC[C@H](C)Sc1nnc(COc2cc(F)c(C#CCOC(=O)NC3CCN(C)CC3)c(F)c2)n1c4cccnc4
CACTVS 3.385CCCC[CH](C)Sc1nnc(COc2cc(F)c(C#CCOC(=O)NC3CCN(C)CC3)c(F)c2)n1c4cccnc4
OpenEye OEToolkits 2.0.7CCCCC(C)Sc1nnc(n1c2cccnc2)COc3cc(c(c(c3)F)C#CCOC(=O)NC4CCN(CC4)C)F
ACDLabs 12.01CN1CCC(NC(=O)OCC#Cc2c(F)cc(OCc3nnc(SC(C)CCCC)n3c3cccnc3)cc2F)CC1
OpenEye OEToolkits 2.0.7CCCC[C@H](C)Sc1nnc(n1c2cccnc2)COc3cc(c(c(c3)F)C#CCOC(=O)NC4CCN(CC4)C)F
FormulaC30 H36 F2 N6 O3 S
Name3-(2,6-difluoro-4-{[(4P)-5-{[(2S)-hexan-2-yl]sulfanyl}-4-(pyridin-3-yl)-4H-1,2,4-triazol-3-yl]methoxy}phenyl)prop-2-yn-1-yl (1-methylpiperidin-4-yl)carbamate
ChEMBL
DrugBank
ZINC
PDB chain8uv2 Chain F Residue 903 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8uv2 Mechanism of allosteric inhibition of human p97/VCP ATPase and its disease mutant by triazole inhibitors.
Resolution3.23 Å
Binding residue
(original residue number in PDB)
P496 V497 P500 F503 L504 G507 T509 P510 S511 K512 C535 A537 C572 K615 N616
Binding residue
(residue number reindexed from 1)
P475 V476 P479 F482 L483 G486 T488 P489 S490 K491 C514 A516 C551 K594 N595
Annotation score1
External links
PDB RCSB:8uv2, PDBe:8uv2, PDBj:8uv2
PDBsum8uv2
PubMed39122922
UniProtP55072|TERA_HUMAN Transitional endoplasmic reticulum ATPase (Gene Name=VCP)

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