Structure of PDB 6odf Chain F Binding Site BS03

Receptor Information
>6odf Chain F (length=419) Species: 11021 (Eastern equine encephalitis virus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LDTHFTQYKLARPYIADCPNCGHSRCDSPIAIEEVRGDAHAGVIRIQTSA
MFGLKTDGVDLAYMSFMNGKTQKSIKIDNLHVRTSAPCSLVSHHGYYILA
QCPPGDTVTVGFHDGPNRHTCTVAHKVEFRPVGREKYRHPPEHGVELPCN
RYTHKRADQGHYVEMHQPGLVADHSLLSIHSAKVKITVPSGAQVKYYCKC
PDVREGITSSDHTTTCTDVKQCRAYLIDNKKWVYNSGRLPRGEGDTFKGK
LHVPFVPVKAKCIATLAPEPLVEHKHRTLILHLHPDHPTLLTTRSLGSDA
NPTRQWIERPTTVNFTVTGEGLEYTWGNHPPKRVWAQESGEGNPHGWPHE
VVVYYYNRYPLTTIIGLCTCVAIIMVSCVTSVWLLCRTRNLCITPYKLAP
NAQVPILLALLCCIKPTRA
Ligand information
Ligand IDU97
InChIInChI=1S/C6H10O10S/c7-1-2(8)4(16-17(12,13)14)6(11)15-3(1)5(9)10/h1-4,6-8,11H,(H,9,10)(H,12,13,14)/t1-,2+,3+,4-,6-/m0/s1
InChIKeyCOJBCAMFZDFGFK-BKBMJHBISA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7C1(C(C(OC(C1OS(=O)(=O)O)O)C(=O)O)O)O
CACTVS 3.385O[C@H]1O[C@H]([C@@H](O)[C@@H](O)[C@@H]1O[S](O)(=O)=O)C(O)=O
CACTVS 3.385O[CH]1O[CH]([CH](O)[CH](O)[CH]1O[S](O)(=O)=O)C(O)=O
OpenEye OEToolkits 2.0.7[C@H]1([C@@H]([C@@H](O[C@@H]([C@H]1OS(=O)(=O)O)O)C(=O)O)O)O
ACDLabs 12.01C1(C(C(=O)O)OC(O)C(C1O)OS(O)(=O)=O)O
FormulaC6 H10 O10 S
Name2-O-sulfo-beta-L-galactopyranuronic acid
ChEMBL
DrugBank
ZINC
PDB chain6odf Chain M Residue 2 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6odf Cryo-EM structure of eastern equine encephalitis virus in complex with heparan sulfate analogues.
Resolution5.8 Å
Binding residue
(original residue number in PDB)		L62 S93 H155 K156 R157
Binding residue
(residue number reindexed from 1)		L61 S92 H154 K155 R156
Annotation score1
Enzymatic activity
Enzyme Commision number 3.4.21.90: togavirin.
Gene Ontology
Molecular Function
GO:0005198 structural molecule activity
Cellular Component
GO:0019028 viral capsid

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:6odf, PDBe:6odf, PDBj:6odf
PDBsum6odf
PubMed32245806
UniProtQ4QXJ7|POLS_EEEVF Structural polyprotein

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