Structure of PDB 6chs Chain F Binding Site BS03

Receptor Information
>6chs Chain F (length=550) Species: 759272 (Thermochaetoides thermophila DSM 1495) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NEVGYDDIGGCRKQLAQIREMVELPLRHPQLFKSIGIKPPRGVLLYGPPG
TGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSP
AIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATN
RPNSIDPALRRFGRFDREVDIGIPDPTGRLEILQIHTKNMKLADDVDLEQ
IAAETHGYVGSDLAALCSEAAMQQIREKMDLIDLDEDTIDAEVLDSLGVT
MDNFRYALGVSNPSALREVAVVEVPNVRWEDIGGLEQVKQELKEQVQYPV
DHPEKFLKFGLSPSRGVLFYGPPGTGKTMLAKAVANECAANFISVKGPEL
LSMWFGESESNIRDIFDKARAAAPCVVFLDELDSIAKARGGSIGDAGGAS
DRVVNQLLTEMDGMTSKKNVFVIGATNRPEQLDPALCRPGRLDQLIYVPL
PDEAGRLSILKAQLRKTPVSKDVDLAYIASKTHGFSGADLAFITQRAVKL
AIKESIAAEIEPVPELTKRHFEEAMRDARRSVSDVEIRRYEAFAQQMKNA
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain6chs Chain F Residue 903 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6chs Structure of the Cdc48 ATPase with its ubiquitin-binding cofactor Ufd1-Npl4.
Resolution4.3 Å
Binding residue
(original residue number in PDB)		T268 D320
Binding residue
(residue number reindexed from 1)		T54 D106
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0016787 hydrolase activity
GO:0016887 ATP hydrolysis activity
GO:0031593 polyubiquitin modification-dependent protein binding
Biological Process
GO:0030970 retrograde protein transport, ER to cytosol
GO:0051228 mitotic spindle disassembly
GO:0051301 cell division
GO:0097352 autophagosome maturation
Cellular Component
GO:0005634 nucleus
GO:0005829 cytosol
GO:0034098 VCP-NPL4-UFD1 AAA ATPase complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6chs, PDBe:6chs, PDBj:6chs
PDBsum6chs
PubMed29967539
UniProtG0S6Y2

[Back to BioLiP]