Structure of PDB 5xqj Chain F Binding Site BS03

Receptor Information
>5xqj Chain F (length=900) Species: 5076 (Penicillium chrysogenum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NCTSSSATVHWLGDKPTYHAGVTFGLPWPQGKYRPQETSFSLTGDELQSW
ATGYWADGSLKWTAHAIAESNQIYDQYTVTASSLGCVKSSSSSSESSAPN
SSIVVTDNSDALTVNTGEVAVSFPKGGNVIIGDIKTKSGKVIGANGRLVL
QSQDSVPDNFDNRANSPIQYSNFDGNINEVFVNQTSARTLVTVRGNHTVT
DGTDHDPWLPFVVRFYLYANSATIKVMHSIVFDGDENDFITGLGIRFDVP
LKGEEYYDRHIRFAGVDGGIFNEAVQGITGLRRDPGEEIRAAQFAGQKLA
DTETWEPRVSTRLKWIPTWADYGLTQLTADGFGLKKRTKAGQSWVNIPSG
TRAEGLAYLGGATQGGLAVGLRDFWKRYPVGLDISNAASDTGELTLWLYS
PAAEPLDLRPFHDGLGQDGYEDQLDALEITYEDWEPGFDTPYGIARTSEV
YLFAFDQTPTSDKLASLTAYMNDPPVLVAEPKYIHETQALGEYWALPGSA
SPAAATLEDRLQFIFDFYKGQIEQRRWYGFLDYGDFMHTYDPDRHTWRYD
VGGYAWDNSELSPDLFFWLYFLRTGSKDAYRFAEALTRHTGEVDVYHIGD
WKGLGTRHGVQHWSDSAKQARISQPQYRKYFFYLSGGDERVGELLEELLD
TDKTYGELDPQRKVRTDGWEPSPNSTVSFGLGTDWSGLAAGWLIEWERRG
PRWEEAKTKLTNTIAGIANLTNGFVTGSGLYDPVTWTLGPPPSDPGNRGN
VSISHLNAVFGLPEVVSEAIAYLADDIPKGFKQAWLDYCYYYHASASEQK
DRYGVSFSKISLLQAHSRLAAYAAYETKNKTLALRAWKDFYASDGLLPDA
PWNITHVDGSDVLVPVDEAAWLATNDIAQYGLAVIQNLAYVSDSLDDYQS
Ligand information
Ligand IDGAL
InChIInChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3+,4+,5-,6-/m1/s1
InChIKeyWQZGKKKJIJFFOK-FPRJBGLDSA-N
SMILES
SoftwareSMILES
CACTVS 3.370OC[C@H]1O[C@@H](O)[C@H](O)[C@@H](O)[C@H]1O
OpenEye OEToolkits 1.7.2C(C1C(C(C(C(O1)O)O)O)O)O
CACTVS 3.370OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
ACDLabs 12.01OC1C(O)C(OC(O)C1O)CO
OpenEye OEToolkits 1.7.2C([C@@H]1[C@@H]([C@@H]([C@H]([C@@H](O1)O)O)O)O)O
FormulaC6 H12 O6
Namebeta-D-galactopyranose;
beta-D-galactose;
D-galactose;
galactose
ChEMBLCHEMBL300520
DrugBank
ZINCZINC000002597049
PDB chain5xqj Chain N Residue 3 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5xqj Crystal structure of exo-rhamnogalacturonan lyase from Penicillium chrysogenum as a member of polysaccharide lyase family 26
Resolution2.75 Å
Binding residue
(original residue number in PDB)		Q646 R648 Q688 T710
Binding residue
(residue number reindexed from 1)		Q619 R621 Q661 T683
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:5xqj, PDBe:5xqj, PDBj:5xqj
PDBsum5xqj
PubMed29574769
UniProtB6H7Q7

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