Structure of PDB 5v0t Chain F Binding Site BS03

Receptor Information
>5v0t Chain F (length=455) Species: 266265 (Paraburkholderia xenovorans LB400) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GRLIIVSNRVAPISEGGPAAGGLAVGVYDALKETGGMWFGWSGDVLSSGQ
PQIKVEERGPVTFATIALMRRDYDQYYRGFSNATLWPAFHYRADLLQYDR
HDFEGYWRVNAWLAQQLVPLLREDDVIWVHDYHLIPFAQALRAAGVKNRI
GFFLHIPFPASQVLLAVPPHRELVEALCSFDLLGFQTAPDLRAFCDYIVN
EANGTADPGPLTIHAFGRTLRAAAYPIGVYPDEIAELAKAGERGKPVRTM
KATLHSRKLIMSVDRLDYSKGLVERFRAFERLLEHSTAQRNKVSFLQIAP
PTRADMHAYQDIRLQLEGESGRINGRFAELDWTPILYIHKQYERSVLAAL
FRTAHVGYVTPLRDGMNLVAKEYVSAQDPENPGVLVLSRFAGAAQELDGA
LIVNPVDIDGMAEALARALDMPLAERQARHRDMMVQLRENNVSVWRDNFM
RDLQG
Ligand information
Ligand IDOXD
InChIInChI=1S/C2H2O4/c3-1(4)2(5)6/h(H,3,4)(H,5,6)
InChIKeyMUBZPKHOEPUJKR-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341OC(=O)C(O)=O
ACDLabs 10.04O=C(O)C(=O)O
OpenEye OEToolkits 1.5.0C(=O)(C(=O)O)O
FormulaC2 H2 O4
NameOXALIC ACID
ChEMBLCHEMBL146755
DrugBankDB03902
ZINCZINC000006021239
PDB chain5v0t Chain F Residue 506 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5v0t Crystal structure of an alpha,alpha-trehalose-phosphate synthase (UDP-forming) from Burkholderia xenovorans in complex with glucose-6-phosphate
Resolution1.95 Å
Binding residue
(original residue number in PDB)		K352 Y354
Binding residue
(residue number reindexed from 1)		K340 Y342
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) H164 D376
Catalytic site (residue number reindexed from 1) H155 D364
Enzyme Commision number 2.4.1.15: alpha,alpha-trehalose-phosphate synthase (UDP-forming).
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0003824 catalytic activity
GO:0003825 alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity
GO:0016757 glycosyltransferase activity
GO:0016758 hexosyltransferase activity
Biological Process
GO:0005992 trehalose biosynthetic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:5v0t, PDBe:5v0t, PDBj:5v0t
PDBsum5v0t
PubMed
UniProtQ13W28

[Back to BioLiP]