Structure of PDB 6q9a Chain E Binding Site BS03

Receptor Information
>6q9a Chain E (length=177) Species: 562 (Escherichia coli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLD
NAAADLAAISGQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFE
RLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRG
LDITITTTAKSDEEGRALLAAFDFPFR
Ligand information
>6q9a Chain 7 (length=76) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ggggcuauagcucagcugggagagcgccugcuuugcacgcaggaggucug
cgguucgaucccgcauagcuccacca
<<<........<.........>....<<<<<.......>>>>>.....<<
<<<.......>>>>>...>>>.....
Receptor-Ligand Complex Structure
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PDB6q9a How a circularized tmRNA moves through the ribosome.
Resolution3.7 Å
Binding residue
(original residue number in PDB)		S73 V74 A75 R80
Binding residue
(residue number reindexed from 1)		S72 V73 A74 R79
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0008097 5S rRNA binding
GO:0019843 rRNA binding
Biological Process
GO:0000027 ribosomal large subunit assembly
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Biological Process
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Cellular Component
External links
PDB RCSB:6q9a, PDBe:6q9a, PDBj:6q9a
PDBsum6q9a
PubMed30765567
UniProtP62399|RL5_ECOLI Large ribosomal subunit protein uL5 (Gene Name=rplE)

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