Structure of PDB 5zjt Chain E Binding Site BS03
Receptor Information
>5zjt Chain E (length=58) Species:
7227
(Drosophila melanogaster) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
KKRKPYSKFQTLELEKEFLFNAYVSKQKRWELARNLQLTERQVKIWFQNR
RMKNKKNS
Ligand information
>5zjt Chain H (length=14) [
Search DNA sequence
] [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
gtcatttatcatgc
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
5zjt
Intrinsic DNA Shape Accounts for Affinity Differences between Hox-Cofactor Binding Sites.
Resolution
2.4 Å
Binding residue
(original residue number in PDB)
R23 K24 P25 Y26 R61 Q62 I65 N69 K73
Binding residue
(residue number reindexed from 1)
R3 K4 P5 Y6 R41 Q42 I45 N49 K53
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0000981
DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0003677
DNA binding
Biological Process
GO:0006355
regulation of DNA-templated transcription
View graph for
Molecular Function
View graph for
Biological Process
External links
PDB
RCSB:5zjt
,
PDBe:5zjt
,
PDBj:5zjt
PDBsum
5zjt
PubMed
30157419
UniProt
P09087
|ABDB_DROME Homeobox protein abdominal-B (Gene Name=Abd-B)
[
Back to BioLiP
]