Structure of PDB 8wg2 Chain D Binding Site BS03

Receptor Information
>8wg2 Chain D (length=679) Species: 376686 (Flavobacterium johnsoniae UW101) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SDLKSPDGNFLMHFSLEADGTPVYKLIYKGKDVIKASKLGFTLKNDNKSL
LNDFKIEDTKTSSFDENWKPVWGEVSSIRNNYNELAVSLSQKETDRKMII
RFRLFDDGLGFRYEFPQQNNLIYFTIKEERTQFAMAGDHTAYWIPGDYDT
QEYNYSTSKLSEIRGLMEKAYTKASQTSFSPTGVQTSLMMKSQDGLYINL
HEAALINYSCMHLNLDDKNFVFESWLTPDSHGDKGKMQAPCKTPWRTVIV
SDDARNILASKLTYNLNEPSKIQETSWIKPTKYVGVWWEMISGKSTWSYT
DEFPSVQLGVTDFSKAKPNRKHGATTANVKRYIDFAAKNGFDAVLVEGWN
EGWEDWIGHEKDYVFDFVTPYPDFDIKGLNEYAHAKKVKLIMHHETSGAV
RNYERHMDAAYKLMKQYGYDAVKSGYVGNILPLGETHYSQWTNNHYQYAI
EKAADYQIMVNAHEAVRPTGIARTYPNLIGNEAARGTQYQAFGNDRNNAN
HVTILPFTRLIGGPMDYTPGIFEMDVTNGSHVNATIANQLALYVTMYSPL
QMAADFPENYERFADAFQFIKDVAVDWDDSRYLEAEPGQYITVARKAKGT
DNWFLGNVNGETARVSNIDLGFLEKGKKYTAVIYADAKDANYKTNTQAYT
IRKVVVTSNSKLSQFSASGGGYAISFYPV
Ligand information
Ligand IDGLC
InChIInChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5-,6+/m1/s1
InChIKeyWQZGKKKJIJFFOK-DVKNGEFBSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C(C1C(C(C(C(O1)O)O)O)O)O
OpenEye OEToolkits 1.5.0C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)O)O)O)O
CACTVS 3.341OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
CACTVS 3.341OC[C@H]1O[C@H](O)[C@H](O)[C@@H](O)[C@@H]1O
ACDLabs 10.04OC1C(O)C(OC(O)C1O)CO
FormulaC6 H12 O6
Namealpha-D-glucopyranose;
alpha-D-glucose;
D-glucose;
glucose
ChEMBLCHEMBL423707
DrugBank
ZINCZINC000003861213
PDB chain8wg2 Chain H Residue 3 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8wg2 Structural insights into alpha-(1->6)-linkage preference of GH97 glucodextranase from Flavobacterium johnsoniae.
Resolution2.45 Å
Binding residue
(original residue number in PDB)		W308 E368 W374 H414 E416 K444 V448 H484 E485 E503 Q509
Binding residue
(residue number reindexed from 1)		W287 E347 W353 H393 E395 K423 V427 H463 E464 E482 Q488
Annotation score4
Enzymatic activity
Enzyme Commision number 3.2.1.70: glucan 1,6-alpha-glucosidase.
Gene Ontology
Molecular Function
GO:0016787 hydrolase activity
GO:0030246 carbohydrate binding
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:8wg2, PDBe:8wg2, PDBj:8wg2
PDBsum8wg2
PubMed38661728
UniProtA5FBI0

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