Structure of PDB 8uvp Chain D Binding Site BS03

Receptor Information
>8uvp Chain D (length=555) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYG
PPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEK
NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMA
ATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD
LEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSL
AVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQY
PVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGP
ELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGG
AADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI
PLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRAC
KLAIRESIESEIRRERERQDPVPEIRRDHFEEAMRFARRSVSDNDIRKYE
MFAQT
Ligand information
Ligand IDXO8
InChIInChI=1S/C30H34F2N8O3S/c1-19-15-38(16-20(2)43-19)29(41)17-39-34-14-26(37-39)23-11-25(32)27(12-24(23)31)42-18-28-35-36-30(44-22-8-4-3-5-9-22)40(28)21-7-6-10-33-13-21/h6-7,10-14,19-20,22H,3-5,8-9,15-18H2,1-2H3/t19-,20+
InChIKeyJZEVLAPZAZFAHE-BGYRXZFFSA-N
SMILES
SoftwareSMILES
CACTVS 3.385C[CH]1CN(C[CH](C)O1)C(=O)Cn2ncc(n2)c3cc(F)c(OCc4nnc(SC5CCCCC5)n4c6cccnc6)cc3F
CACTVS 3.385C[C@@H]1CN(C[C@H](C)O1)C(=O)Cn2ncc(n2)c3cc(F)c(OCc4nnc(SC5CCCCC5)n4c6cccnc6)cc3F
OpenEye OEToolkits 2.0.7CC1CN(CC(O1)C)C(=O)Cn2ncc(n2)c3cc(c(cc3F)OCc4nnc(n4c5cccnc5)SC6CCCCC6)F
OpenEye OEToolkits 2.0.7C[C@@H]1CN(C[C@@H](O1)C)C(=O)Cn2ncc(n2)c3cc(c(cc3F)OCc4nnc(n4c5cccnc5)SC6CCCCC6)F
ACDLabs 12.01O=C(Cn1ncc(n1)c1cc(F)c(OCc2nnc(SC3CCCCC3)n2c2cccnc2)cc1F)N1CC(C)OC(C)C1
FormulaC30 H34 F2 N8 O3 S
Name2-[(4P)-4-(4-{[(4P)-5-(cyclohexylsulfanyl)-4-(pyridin-3-yl)-4H-1,2,4-triazol-3-yl]methoxy}-2,5-difluorophenyl)-2H-1,2,3-triazol-2-yl]-1-[(2R,6S)-2,6-dimethylmorpholin-4-yl]ethan-1-one
ChEMBL
DrugBank
ZINC
PDB chain8uvp Chain D Residue 903 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8uvp Mechanism of allosteric inhibition of human p97/VCP ATPase and its disease mutant by triazole inhibitors.
Resolution3.6 Å
Binding residue
(original residue number in PDB)
L492 V493 P496 V497 P510 K512 P571 K615 N616
Binding residue
(residue number reindexed from 1)
L297 V298 P301 V302 P315 K317 P376 K420 N421
Annotation score1
External links
PDB RCSB:8uvp, PDBe:8uvp, PDBj:8uvp
PDBsum8uvp
PubMed39122922
UniProtP55072|TERA_HUMAN Transitional endoplasmic reticulum ATPase (Gene Name=VCP)

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