Structure of PDB 8tzx Chain D Binding Site BS03

Receptor Information
>8tzx Chain D (length=341) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DSCQVIPVLPQVMMILIPGQTLPLQLFHPQEVSMVRNLIQKDRTFAVLAY
SNAQFGTTAEIYAYREEQDFGIEIVKVKAIGRQRFKVLELRTQSDGIQQA
KVQILPECVLPSTMSAVQLESLNKCQIFPSKPVSYKWWQKYQKRKFHCAN
LTSWPRWLYSLYDAETLMDRIKKQLREWDENLKDDSLPSNPIDFSYRVAA
CLPIDDVLRIQLLKIGSAIQRLRCELDIMNKCTSLCCKQCQETEITTKNE
IFSLSLCGPMAAYVNPHGYVHETLTVYKACNLNLIGRPSTEHSWFPGYAW
TVAQCKICASHIGWKFTATKKDMSPQKFWGLTRSALLPTIP
Ligand information
Ligand IDU3I
InChIInChI=1S/C22H29N3O4/c1-3-24-11-5-4-6-18(24)14(2)29-16-7-8-17-15(12-16)13-25(22(17)28)19-9-10-20(26)23-21(19)27/h7-8,12,14,18-19H,3-6,9-11,13H2,1-2H3,(H,23,26,27)/t14-,18-,19+/m1/s1
InChIKeyFVZCFUKXGUUDBQ-ZMYBRWDISA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CCN1CCCCC1C(C)Oc2ccc3c(c2)CN(C3=O)C4CCC(=O)NC4=O
CACTVS 3.385CCN1CCCC[CH]1[CH](C)Oc2ccc3C(=O)N(Cc3c2)[CH]4CCC(=O)NC4=O
CACTVS 3.385CCN1CCCC[C@@H]1[C@@H](C)Oc2ccc3C(=O)N(Cc3c2)[C@H]4CCC(=O)NC4=O
ACDLabs 12.01CCN1CCCCC1C(C)Oc1cc2CN(C3CCC(=O)NC3=O)C(=O)c2cc1
OpenEye OEToolkits 2.0.7CCN1CCCC[C@@H]1[C@@H](C)Oc2ccc3c(c2)CN(C3=O)[C@H]4CCC(=O)NC4=O
FormulaC22 H29 N3 O4
Name(3S)-3-(5-{(1R)-1-[(2R)-1-ethylpiperidin-2-yl]ethoxy}-1-oxo-1,3-dihydro-2H-isoindol-2-yl)piperidine-2,6-dione
ChEMBL
DrugBank
ZINC
PDB chain8tzx Chain D Residue 502 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8tzx A molecular glue degrader of the WIZ transcription factor for fetal hemoglobin induction.
Resolution3.15 Å
Binding residue
(original residue number in PDB)
N351 P352 H353 H378 W380 W386 W400 F402
Binding residue
(residue number reindexed from 1)
N265 P266 H267 H292 W294 W300 W314 F316
Annotation score1
External links
PDB RCSB:8tzx, PDBe:8tzx, PDBj:8tzx
PDBsum8tzx
PubMed38963839
UniProtQ96SW2|CRBN_HUMAN Protein cereblon (Gene Name=CRBN)

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