Structure of PDB 8s9v Chain D Binding Site BS03

Receptor Information
>8s9v Chain D (length=518) Species: 1148 (Synechocystis sp. PCC 6803) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ARKVTTRWKITGTLIAETPLHIGGVGGDADTDLALAVNGAGEYYVPGTSL
AGALRGWMTQLLNNDESQIKDLWGDHLDAKRGASFVIVDDAVIHIPNNAD
VEIREGVGIDRHFGTAANGFKYSRAVIPKGSKFKLPLTFDSQDDGLPNAL
IQLLCALEAGDIRLGAAKTRGLGRIKLDDLKLKSFALDKPEGIFSALLDQ
GKKLDWNQLKANVTYQSPPYLGISITWNPKDPVMVKAEGDGLAIDILPLV
SQVGSDVRFVIPGSSIKGILRTQAERIIRTICQSNGSEKNFLEQLRINLV
NELFGSASLSQKQNGKDIDLGKIGALAVNDCFSSLSMTPDQWKAVENATE
MTGNLQPALKQATGYPNNISQAYKVLQPAMHVAVDRWTGGAAEGMLYSVL
EPIGVTWEPIQVHLDIARLKNYYHGKEEKLKPAIALLLLVLRDLANKKIP
VGYGTNRGMGTITVSQITLNGKALPTELEPLNKTMTCPNLTDLDEAFRQD
LSTAWKEWIADPIDLCQQ
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain8s9v Chain D Residue 602 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8s9v RNA targeting and cleavage by the type III-Dv CRISPR effector complex.
Resolution3.0 Å
Binding residue
(original residue number in PDB)		D246 L397
Binding residue
(residue number reindexed from 1)		D245 L396
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Biological Process
GO:0051607 defense response to virus

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Molecular Function
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Biological Process
External links
PDB RCSB:8s9v, PDBe:8s9v, PDBj:8s9v
PDBsum8s9v
PubMed38637512
UniProtQ6ZED3

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