Structure of PDB 8jem Chain D Binding Site BS03

Receptor Information
>8jem Chain D (length=419) Species: 264199 (Streptococcus thermophilus LMG 18311) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
FQGSMIDFLKQLPHLEPYGNPFYFIYLGIALLPIFIGLFFKKRFAIYECL
VSITFIVLALTGTHASQILALLFYIVWQIIWVYSYKRYRSQRDNKWVFYL
HSFLVVLPLILVKVEPTINGTQSLLNFLGISYLTFRAVGMIIEMRDGVLK
EFTLGEFLRFMLFMPTFTSGPIDRFKRFNEDYQSIPNRDELLNMLEQAVK
YIMLGFLYKFVLAQIFGSMLLPPLKAQALSQGGIFNLPTLGVMYVYGFDL
FFDFAGYSMFALAVSNLMGIKSPINFDKPFISRDMKEFWNRWHMSLSFWF
RDFVFMRLVIVLMRNKVFKNRNTTSNVAYIINMMVMGFWHGITWYYIAYG
IFHGIGLVINDAWLRKKKTINKDRKKAGLKPLPENKWTKALGIFITFNTV
MLSFLIFSGFLNDLWFTKK
Ligand information
Ligand IDPGT
InChIInChI=1S/C40H79O10P/c1-3-5-7-9-11-13-15-17-18-20-22-24-26-28-30-32-40(44)50-38(36-49-51(45,46)48-34-37(42)33-41)35-47-39(43)31-29-27-25-23-21-19-16-14-12-10-8-6-4-2/h37-38,41-42H,3-36H2,1-2H3,(H,45,46)/t37-,38+/m1/s1
InChIKeyKBPVYRBBONZJHF-AMAPPZPBSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0CCCCCCCCCCCCCCCCCC(=O)OC(COC(=O)CCCCCCCCCCCCCCC)COP(=O)(O)OCC(CO)O
CACTVS 3.341CCCCCCCCCCCCCCCCCC(=O)O[C@@H](COC(=O)CCCCCCCCCCCCCCC)CO[P@](O)(=O)OC[C@H](O)CO
OpenEye OEToolkits 1.5.0CCCCCCCCCCCCCCCCCC(=O)O[C@@H](COC(=O)CCCCCCCCCCCCCCC)CO[P@@](=O)(O)OC[C@@H](CO)O
CACTVS 3.341CCCCCCCCCCCCCCCCCC(=O)O[CH](COC(=O)CCCCCCCCCCCCCCC)CO[P](O)(=O)OC[CH](O)CO
ACDLabs 10.04O=C(OCC(OC(=O)CCCCCCCCCCCCCCCCC)COP(=O)(OCC(O)CO)O)CCCCCCCCCCCCCCC
FormulaC40 H79 O10 P
Name(1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE;
PHOSPHATIDYLGLYCEROL;
1-PALMITOYL-2-OLEOYL-SN-GLYCERO-3-[PHOSPHO-RAC-(1-GLYCEROL)](SODIUM SALT)
ChEMBL
DrugBank
ZINCZINC000058638415
PDB chain8jem Chain D Residue 502 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8jem Structural insights into the transporting and catalyzing mechanism of DltB in LTA D-alanylation.
Resolution3.23 Å
Binding residue
(original residue number in PDB)
F94 Y95 I106 R141 W295 R303 R310
Binding residue
(residue number reindexed from 1)
F98 Y99 I110 R145 W299 R307 R314
Annotation score4
Enzymatic activity
Enzyme Commision number 2.3.1.-
Gene Ontology
Molecular Function
GO:0016746 acyltransferase activity
Biological Process
GO:0070395 lipoteichoic acid biosynthetic process
Cellular Component
GO:0005886 plasma membrane

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:8jem, PDBe:8jem, PDBj:8jem
PDBsum8jem
PubMed38649359
UniProtQ5M4V4|DLTB_STRT2 Teichoic acid D-alanyltransferase (Gene Name=dltB)

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