Structure of PDB 8dqh Chain D Binding Site BS03

Receptor Information
>8dqh Chain D (length=271) Species: 1291540 (Methanomethylophilus alvi) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GTVKYTDAQIQRLREYGNGTYEQKVFEDLASRDAAFSKEMSVASTDNEKK
IKGMIANPSRHGLTQLMNDIADALVAEGFIEVRTPIFISKDALARMTITE
DKPLFKQVFWIDEKRALRPMLAPNLYSVMRDLRDHTDGPVKIFEMGSCFR
KEMHLEEFTMLALGDMGPRGDATEVLKNYISVVMKAAGLPDYDLVQEESD
VYKETIDVEINGQEVCSAAVGPHYLDAAHDVHEPCSGAGFGLERLLTIRE
KYSTVKKGGASISYLNGAKIN
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain8dqh Chain D Residue 304 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB8dqh Structures of Methanomethylophilus alvus Pyrrolysine tRNA-Synthetases Support the Need for De Novo Selections When Altering the Substrate Specificity.
Resolution1.52 Å
Binding residue
(original residue number in PDB)		E218 S221
Binding residue
(residue number reindexed from 1)		E214 S217
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0004812 aminoacyl-tRNA ligase activity
GO:0005524 ATP binding
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:8dqh, PDBe:8dqh, PDBj:8dqh
PDBsum8dqh
PubMed36395426
UniProtA0A3G3IHP7

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