Structure of PDB 7y6m Chain D Binding Site BS03

Receptor Information
>7y6m Chain D (length=290) Species: 1409 (Bacillus sp. (in: firmicutes)) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KETPESIQEIKAPELWSSGFKGKGITIAVLDTGCDTEHPDLKDQIIGGKN
FTDDDDGDAENVKDYNGHGTHVAGTIAATDQNGGILGVAPEAKLLIVKVL
GGENGSGKYEWIIDGINYAAEQKVDIISMSLGGPSNEPALQEAIQNAVKS
GVLVVCAAGNEGDGDERTEEFSYPAAYNEVIAVGSVSLARESSEFSNANK
EIDLVAPGEDILSTLPNHKYGRLTGTSMAAPHVSGALAIIKNAEEEAFQR
KLTEPEIYAQLVRRTLPLKQSKALVGNGFLYLTAPDVLLE
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0
[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain7y6m Chain D Residue 403 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB7y6m Intracellular Subtilisin from Bacillus sp.
Resolution2.703 Å
Binding residue
(original residue number in PDB)
N213 E214 V215 I216 D238
Binding residue
(residue number reindexed from 1)
N178 E179 V180 I181 D203
Annotation score4
Enzymatic activity
Enzyme Commision number 3.4.21.-
Gene Ontology
Molecular Function
GO:0004252 serine-type endopeptidase activity
GO:0008236 serine-type peptidase activity
GO:0046872 metal ion binding
Biological Process
GO:0006508 proteolysis

View graph for
Molecular Function

View graph for
Biological Process
External links
PDB RCSB:7y6m, PDBe:7y6m, PDBj:7y6m
PDBsum7y6m
PubMed
UniProtA0A7H0M7J5

[Back to BioLiP]