Structure of PDB 7swl Chain D Binding Site BS03

Receptor Information
>7swl Chain D (length=555) Species: 209285 (Thermochaetoides thermophila) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MSILDIAGVDDTLQRLLKEVWFPLRGGEACEKMGYRYDNGVLLHGPSGCG
KTTLAHAIAGSIGVAFIPVSAPSVIGGTSGESEKNIRDVFDEAIRLAPCL
IFLDQIDAIAGRRESANKGMESRIVAEIMNGMDRIRQNTPLGKNVVVLAA
TNRPEFLDPAIRRRFSVEIDMGMPSERAREQILRSLTRDLSLADDINFKE
LAKMTPGYVGSDLQYVVKAAVSESFQANIDSLLAQARAKHPVSQPQRDWL
LLEAHRDEEVSWPSTKITMEQFRKAVSLVQPASKREGFSTIPDTTWSHVG
ALEDVRKKLEMSIIGPIKNPELFTRVGIKPAAGILLWGPPGCGKTLVAKA
VANESKANFISIKGPELLNKYVGESERAVRQLFSRAKSSAPCILFFDQMD
ALVPRRDDSLSDASARVVNTLLTELDGVGDRSGIYVIGATNRPDMIDEAI
RRPGRLGTSIYVGLPSAEDRVKILKTLYRNTVTTDADLEKVALDLRCTGF
SGADLGNLMQAAAQACLERVYTQRQQEPVITMEDWEKALNEVKPSVKDPE
KYMHS
Ligand information
Ligand IDATP
InChIInChI=1S/C10H16N5O13P3/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(26-10)1-25-30(21,22)28-31(23,24)27-29(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H,23,24)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1
InChIKeyZKHQWZAMYRWXGA-KQYNXXCUSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)N
CACTVS 3.341Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O
ACDLabs 10.04O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O
OpenEye OEToolkits 1.5.0c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)O[P@](=O)(O)OP(=O)(O)O)O)O)N
CACTVS 3.341Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@](O)(=O)O[P@@](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O
FormulaC10 H16 N5 O13 P3
NameADENOSINE-5'-TRIPHOSPHATE
ChEMBLCHEMBL14249
DrugBankDB00171
ZINCZINC000004261765
PDB chain7swl Chain D Residue 901 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7swl Communication network within the essential AAA-ATPase Rix7 drives ribosome assembly.
Resolution2.88 Å
Binding residue
(original residue number in PDB)		G504 P544 G545 C546 G547 K548 T549 L550 N645 I677 G733
Binding residue
(residue number reindexed from 1)		G300 P340 G341 C342 G343 K344 T345 L346 N441 I473 G502
Annotation score5
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0016887 ATP hydrolysis activity

View graph for
Molecular Function
External links
PDB RCSB:7swl, PDBe:7swl, PDBj:7swl
PDBsum7swl
PubMed36090660
UniProtG0RZG1

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