Structure of PDB 7dya Chain D Binding Site BS03

Receptor Information
>7dya Chain D (length=164) Species: 243274 (Thermotoga maritima MSB8) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MMVISEKVRKALNDQLNREIYSSYLYLSMATYFDAEGFKGFAHWMKKQAQ
EELTHAMKFYEYIYERGGRVELEAIEKPPSNWNGIKDAFEAALKHEEFVT
QSIYNILELASEEKDHATVSFLKWFVDEQVEEEDQVREILDLLEKANGQM
SVIFQLDRYLGQRE
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain7dya Chain D Residue 203 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB7dya Protein interface redesign facilitates the transformation of nanocage building blocks to 1D and 2D nanomaterials.
Resolution2.197 Å
Binding residue
(original residue number in PDB)		E51 E132 Q135
Binding residue
(residue number reindexed from 1)		E51 E132 Q135
Annotation score1
Enzymatic activity
Enzyme Commision number 1.16.3.2: bacterial non-heme ferritin.
Gene Ontology
Molecular Function
GO:0004322 ferroxidase activity
GO:0008198 ferrous iron binding
GO:0008199 ferric iron binding
GO:0046872 metal ion binding
Biological Process
GO:0006826 iron ion transport
GO:0006879 intracellular iron ion homeostasis
GO:0006880 intracellular sequestering of iron ion
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7dya, PDBe:7dya, PDBj:7dya
PDBsum7dya
PubMed34381032
UniProtQ9X0L2

[Back to BioLiP]