Structure of PDB 7d6n Chain D Binding Site BS03

Receptor Information

>7d6n Chain D (length=589) Species: 11084 (Tick-borne encephalitis virus)

KVKEKDVQERISALREQYGETWHMDREHPYRTWQYWGSYRTAPTGSAASL
INGVVKLLSWPWNAREDVVRMAMTDTTAFGQQRVFKEKVDTKAQEPQPGT
KVIMRAVNDWILERLARKSKPRMCSREEFIAKVKSNQNRWSSAKEAVEDP
AFWQLVDEERERHLAGRCAHCVYNMMWYMWLGSRFLEFEALGFLNEDHWA
SRGSSGSGVEGISLNYLGWYLKGLSTLEGGLFYADDTAGWDTKVTNADLE
DEEQLLRYMEGEHKQLAATIMQKAYHAKVVKVARPSRDGGCVMDVITRRD
QRGSGQVVTYALNTLTNIKVQLIRMMEGEGVIEASDAHNPRLLRVERWLR
DHGEERLGRMLVSGDDCVVRPVDDRFSRALYFLNDMAKTRKDIGEWEHSV
GFSNWEEVPFCSHHFHELVMKDGRALIVPCRDQDELVGRARVSPGCGWSV
RETACLSKAYGQMWLLSYFHRRDLRTLGLAICSAVPIDWVPTGRTTWSIH
ASGAWMTTEDMLDVWNRVWILDNPFMHSKEKIVEWRDVPYLPKSHDMLCS
SLVGRKERAEWAKNIWGAVEKVRKMIGQEKFKDYLSCMD

Ligand information

• Ligand ID: MG
• InChI: InChI=1S/Mg/q+2
• InChIKey: JLVVSXFLKOJNIY-UHFFFAOYSA-N
• SMILES:
  ACDLabs 10.04
  OpenEye OEToolkits 1.5.0: [Mg+2]
  CACTVS 3.341: [Mg++]
• Formula: Mg
• Name: MAGNESIUM ION
• DrugBank: DB01378
• PDB chain: 7d6n Chain D Residue 1003

Receptor-Ligand Complex Structure

Structure summary

• PDB: 7d6n Crystal structure of tick-borne encephalitis virus
• Resolution: 3.168 Å
• Binding residue (original residue number in PDB): D535 D665
• Binding residue (residue number reindexed from 1): D236 D366
• Annotation score: 1

Enzymatic activity

• Enzyme Commision number: 3.4.21.91: flavivirin.
  3.6.1.15: nucleoside-triphosphate phosphatase.
  3.6.4.13: RNA helicase.

Gene Ontology

Molecular Function

• GO:0003968 RNA-dependent RNA polymerase activity
• GO:0005524 ATP binding

Biological Process

• GO:0039694 viral RNA genome replication

External links

• PDB: RCSB:7d6n, PDBe:7d6n, PDBj:7d6n
• PDBsum: 7d6n
• UniProt: K4P8A2