Structure of PDB 6kdv Chain D Binding Site BS03

Receptor Information
>6kdv Chain D (length=280) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SYLYVEHAVVEREAGGIGIYDQEGLTLAPVAGLGVLFLGPGTRITHAAVR
LLAENGCTVAWVGEGMARFYAQGLGDTRSAARFYRQARAWADPALHLEVV
MRLYRMRFSEPLPEGLTLEQVRGLEGVRVRNAYARWSRETGVPWYGRSYD
RGNWRAADPVNRALSAGASYLYGLAHAAIVSLGFSPALGFIHTGKLLSFV
YDIADLYKADYLVPAAFRTVAESEEAVERRVRRALREAIQEGRLLERMAE
DLLNLFRGLGLPTRPGGLWDLEGEVEGGVA
Ligand information
Receptor-Ligand Complex Structure
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PDB6kdv Crystal structure of Cas1 in complex with branched DNA.
Resolution3.11 Å
Binding residue
(original residue number in PDB)		S168 Y169 R171 G172 W174 R175 T213 Y221
Binding residue
(residue number reindexed from 1)		S148 Y149 R151 G152 W154 R155 T193 Y201
Enzymatic activity
Enzyme Commision number 3.1.-.-
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
GO:0003677 DNA binding
GO:0004519 endonuclease activity
GO:0004520 DNA endonuclease activity
GO:0046872 metal ion binding
Biological Process
GO:0043571 maintenance of CRISPR repeat elements
GO:0051607 defense response to virus

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Molecular Function
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Biological Process
External links
PDB RCSB:6kdv, PDBe:6kdv, PDBj:6kdv
PDBsum6kdv
PubMed31792780
UniProtQ53WG8|CAS1B_THET8 CRISPR-associated endonuclease Cas1 2 (Gene Name=cas1-2)

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