Structure of PDB 5fju Chain D Binding Site BS03

Receptor Information
>5fju Chain D (length=367) Species: 37632 (Amycolatopsis sp.) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MKLSGVELRRVQMPLVAPFRTSFGTASVRELLLLRAVTPAGEGWGECVTI
AGPLYSSEYNDGAEHVLRHYLIPALLAAEDITAAKVTPLLAKFKGHRMAK
GALEMAVLDAELRAHERSFAAELGSVRDSVPCGVSVGIMDTIPQLLDVVG
GYLDEGYVRIKLKIEPGWDVEPVRAVRERFGDDVLLQVDANTAYTLGDAP
QLARLDPFGLLLIEQPLEEEDVLGHAELARRIQTPICLDESIVSARAAAD
AIKLGAVQIVNIKPGRVGGYLEARRVHDVCAAHGIPVWCGDMIETGLGRA
ANVALASLPNFTLPGDTSASDRYYKTDITEPFVLSGGHLPVPTGPGLGVA
PIPELLDEVTTAKVWIG
Ligand information
Ligand ID5CR
InChIInChI=1S/C11H13NO3/c1-8(13)12-10(11(14)15)7-9-5-3-2-4-6-9/h2-6,10H,7H2,1H3,(H,12,13)(H,14,15)/t10-/m0/s1
InChIKeyCBQJSKKFNMDLON-JTQLQIEISA-N
SMILES
SoftwareSMILES
CACTVS 3.385CC(=O)N[C@@H](Cc1ccccc1)C(O)=O
OpenEye OEToolkits 1.7.6CC(=O)NC(Cc1ccccc1)C(=O)O
OpenEye OEToolkits 1.7.6CC(=O)N[C@@H](Cc1ccccc1)C(=O)O
CACTVS 3.385CC(=O)N[CH](Cc1ccccc1)C(O)=O
FormulaC11 H13 N O3
NameN-acetyl-L-phenylalanine
ChEMBLCHEMBL55743
DrugBank
ZINCZINC000000135391
PDB chain5fju Chain D Residue 1370 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5fju Structure of N-Acylamino Acid Racemase Mutants in Complex with Substrates
Resolution2.52 Å
Binding residue
(original residue number in PDB)		S135 K161 K163 K263 D291 M292 I293
Binding residue
(residue number reindexed from 1)		S135 K161 K163 K263 D291 M292 I293
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) F19 S135 K161 K163 D189 N191 E214 D239 E240 S241 K263 G290 D291 M292 G315 D316 T317
Catalytic site (residue number reindexed from 1) F19 S135 K161 K163 D189 N191 E214 D239 E240 S241 K263 G290 D291 M292 G315 D316 T317
Enzyme Commision number 4.2.1.113: o-succinylbenzoate synthase.
5.1.1.-
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0016829 lyase activity
GO:0016853 isomerase activity
GO:0043748 O-succinylbenzoate synthase activity
GO:0046872 metal ion binding
Biological Process
GO:0009234 menaquinone biosynthetic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:5fju, PDBe:5fju, PDBj:5fju
PDBsum5fju
PubMed
UniProtQ44244|NSAR_AMYSP N-succinylamino acid racemase (Gene Name=Aaar)

[Back to BioLiP]