Structure of PDB 5ecl Chain D Binding Site BS03

Receptor Information
>5ecl Chain D (length=569) Species: 3702 (Arabidopsis thaliana) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TFDMNRVIDEFDEMTRNAHQVQKQTLKEILLKNQSAIYLQNCGLNGNATD
PEEAFKSMVPLVTDVELEPYIKRMVDGDTSPILTGHPVPAISLSSGTSQG
RPKFIPFTDELMENTLQLFRTAFAFRNRDFPIDDNGKALQFIFSSKQYIS
TGGVPVGTATTNVYRNPNFKAGMKSITSPSCSPDEVIFSPDVHQALYCHL
LSGILFRDQVQYVFAVFAHGLVHAFRTFEQVWEEIVTDIKDGVLSNRITV
PSVRTAMSKLLTPNPELAETIRTKCMSLSNWYGLIPALFPNAKYVYGIMT
GSMEPYVPKLRHYAGDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIP
NLGYFEFLPVSETGEGEEKPVGLTQVKIGEEYEVVITNYAGLYRYRLGDV
VKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSEEK
IEVIDFSSYIDVSTDPGHYAIFWEISGETNEDVLQDCCNCLDRAFIDAGY
VSSRKCKTIGALELRVVAKGTFRKIQEHFLGLGSSAGQFKMPRCVKPSNA
KVLQILCENVVSSYFSTAF
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain5ecl Chain D Residue 605 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5ecl Structural basis of jasmonate-amido synthetase FIN219 in complex with glutathione S-transferase FIP1 during the JA signal regulation
Resolution1.85 Å
Binding residue
(original residue number in PDB)		S332 S333 E334 G335
Binding residue
(residue number reindexed from 1)		S326 S327 E328 G329
Annotation score1
Enzymatic activity
Enzyme Commision number 6.3.2.52: jasmonoyl--L-amino acid ligase.
Gene Ontology
Molecular Function
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016597 amino acid binding
GO:0016874 ligase activity
GO:0016881 acid-amino acid ligase activity
GO:0019899 enzyme binding
GO:0070728 L-leucine binding
GO:0080123 jasmonoyl-L-amino acid ligase activity
Biological Process
GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010046 response to mycotoxin
GO:0010224 response to UV-B
GO:0018117 protein adenylylation
GO:0045087 innate immune response
GO:0071365 cellular response to auxin stimulus
GO:2000030 regulation of response to red or far red light
Cellular Component
GO:0005737 cytoplasm

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5ecl, PDBe:5ecl, PDBj:5ecl
PDBsum5ecl
PubMed28223489
UniProtQ9SKE2|JAR1_ARATH Jasmonoyl--L-amino acid synthetase JAR1 (Gene Name=JAR1)

[Back to BioLiP]