Structure of PDB 5dzy Chain D Binding Site BS03

Receptor Information
>5dzy Chain D (length=412) Species: 10090 (Mus musculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AISYSMPEETESGYLVANLAQDLGLRVGELTTRGARIHHNGNKELLQLDA
ERGNLLLKEKPDREALCGATEPCVLHFQIILENPVQFFQTDLQFTDINDH
FPEFPDTEMLLKIQEIAQPGTVFPLKAAQDPDIGSNAVQNYTVSPNLHFH
VVTLSRSDDRKYPELVLDRALDREEQPELTLILTALDGGAPPKSGTTTVR
IEVVDINDNAPQFLQSLYAVEVPENSPLNALVVTVSARDLDAGIHGNVAY
SLFQGGGGPQPFVIDEITGEIRLKGALDFEATSYYTMEIVATDSGGLSGK
CTVAIQVLDVNDNAPKLTISSLTSSIPENAPEAVVAVFSVSDPDSGDNGR
MVCSIQNGLPFLLKPTFKNFYTLVTERPLDRESNAEYNITITVSDLGTPR
LTTQHTITVQVS
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain5dzy Chain D Residue 506 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5dzy Structural Basis of Diverse Homophilic Recognition by Clustered alpha- and beta-Protocadherins.
Resolution2.9 Å
Binding residue
(original residue number in PDB)		D63 E65 D100 H101
Binding residue
(residue number reindexed from 1)		D62 E64 D99 H100
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005509 calcium ion binding
Biological Process
GO:0007155 cell adhesion
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules
Cellular Component
GO:0005886 plasma membrane
GO:0016020 membrane

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5dzy, PDBe:5dzy, PDBj:5dzy
PDBsum5dzy
PubMed27161523
UniProtQ91XZ2|PCDB8_MOUSE Protocadherin beta-8 (Gene Name=Pcdhb8)

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