Structure of PDB 4odm Chain D Binding Site BS03

Receptor Information

>4odm Chain D (length=150) Species: 274 (Thermus thermophilus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

MKVGQDKVVTIRYTLQVEGEVLDQGELSYLHGHRNLIPGLEEALEGREEG
EAFQAHVPAEKAYGPHDPEGVQVVPLSAFPEDAEVVPGAQFYAQDMEGNP
MPLTVVAVEGEEVTVDFNHPLAGKDLDFQVEVVKVREATPEELLHGHAHL

Ligand information

>4odm Chain L (length=11) Species: 83333 (Escherichia coli K-12) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

NPKMKPFIFGA

Receptor-Ligand Complex Structure

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Structure summary

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PDB	4odm Molecular insights into substrate recognition and catalytic mechanism of the chaperone and FKBP peptidyl-prolyl isomerase SlyD.
Resolution	1.75 Å
Binding residue (original residue number in PDB)	A78 F79 P80 Q90 F91 Y92
Binding residue (residue number reindexed from 1)	A78 F79 P80 Q90 F91 Y92

Enzymatic activity

Enzyme Commision number

5.2.1.8: peptidylprolyl isomerase.

Gene Ontology

	Molecular Function
GO:0003755	peptidyl-prolyl cis-trans isomerase activity
GO:0046872	metal ion binding

	Biological Process
GO:0042026	protein refolding

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Molecular Function

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Biological Process

External links

PDB	RCSB:4odm, PDBe:4odm, PDBj:4odm
PDBsum	4odm
PubMed	27664121
UniProt	Q5SLE7

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