Structure of PDB 4d69 Chain D Binding Site BS03

Receptor Information
>4d69 Chain D (length=234) Species: 3847 (Glycine max) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AETVSFSWNKFVPKQPNMILQGDAIVTSSGKLQLNKVDENGTPKPSSLGR
ALYSTPIHIWDKETGSVASFAASFNFTFYAPDTKRLADGLAFFLAPIDTK
PQTHAGYLGLFNENESGDQVVAVEFDTFRNSWDPPNPHIGINVNSIRSIK
TTSWDLANNKVAKVLITYDASTSLLVASLVYPSQRTSNILSDVVDLKTSL
PEWVRIGFSAATGLDIPGESHDVLSWSFASNLPH
Ligand information
Ligand IDMN
InChIInChI=1S/Mn/q+2
InChIKeyWAEMQWOKJMHJLA-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mn+2]
CACTVS 3.341[Mn++]
FormulaMn
NameMANGANESE (II) ION
ChEMBL
DrugBankDB06757
ZINC
PDB chain4d69 Chain D Residue 1237 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB4d69 Detection of Tumor-Associated Glycopeptides by Lectins: The Peptide Context Modulates Carbohydrate Recognition.
Resolution2.7 Å
Binding residue
(original residue number in PDB)		D126 F128 N130 D133
Binding residue
(residue number reindexed from 1)		D126 F128 N130 D133
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0030246 carbohydrate binding

View graph for
Molecular Function
External links
PDB RCSB:4d69, PDBe:4d69, PDBj:4d69
PDBsum4d69
PubMed25457745
UniProtP05046|LEC_SOYBN Lectin (Gene Name=LE1)

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