Structure of PDB 3zq4 Chain D Binding Site BS03

Receptor Information
>3zq4 Chain D (length=538) Species: 224308 (Bacillus subtilis subsp. subtilis str. 168) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NDQTAVFALGGLGEIGKNTYAVQFQDEIVLIDAGIKFPEDELLGIDYVIP
DYTYLVKNEDKIKGLFITHGHEDHIGGIPYLLRQVNIPVYGGKLAIGLLR
NKLEEHGLLRQTKLNIIGEDDIVKFRKTAVSFFRTTHSIPDSYGIVVKTP
PGNIVHTGDFKFDFTPVGEPANLTKMAEIGKEGVLCLLSDSTNSENPEFT
MSERRVGESIHDIFRKVDGRIIFATFASNIHRLQQVIEAAVQNGRKVAVF
GRSMESAIEIGQTLGYINCPKNTFIEHNEINRMPANKVTILCTGSQGEPM
AALSRIANGTHRQISINPGDTVVFSSSPIPGNTISVSRTINQLYRAGAEV
IHGPLNDIHTSGHGGQEEQKLMLRLIKPKFFMPIHGEYRMQKMHVKLATD
CGIPEENCFIMDNGEVLALKGDEASVAGKIPSGSVYIDGSGIGDIGNIVL
RDRRILSEEGLVIVVVSIDMDDFKISAGPDLISRGFVDLINDAQELISNH
LQKVMWSEIKNEITDTLAPFLYEKTKRRPMILPIIMEV
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain3zq4 Chain D Residue 1558 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB3zq4 Unusual, Dual Endo- and Exonuclease Activity in the Degradosome Explained by Crystal Structure Analysis of Rnase J1.
Resolution3.0 Å
Binding residue
(original residue number in PDB)		H74 H76 H142
Binding residue
(residue number reindexed from 1)		H69 H71 H137
Annotation score4
Enzymatic activity
Enzyme Commision number 3.1.-.-
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0004519 endonuclease activity
GO:0004521 RNA endonuclease activity
GO:0004527 exonuclease activity
GO:0004534 5'-3' RNA exonuclease activity
GO:0005515 protein binding
GO:0008270 zinc ion binding
GO:0042802 identical protein binding
GO:0046872 metal ion binding
Biological Process
GO:0006364 rRNA processing
GO:0006396 RNA processing
GO:0006397 mRNA processing
Cellular Component
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:3zq4, PDBe:3zq4, PDBj:3zq4
PDBsum3zq4
PubMed21893285
UniProtQ45493|RNJ1_BACSU Ribonuclease J1 (Gene Name=rnjA)

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