Structure of PDB 8ibw Chain C Binding Site BS03

Receptor Information
>8ibw Chain C (length=922) Species: 7091 (Bombyx mori) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GWTCQFCERTFSTNRGLGVHKRRAHPVETNTDAAPMMVKRRWHGEEIDLL
ARTEARLLAERGQCSGGDLFGALPGFGRTLEAIKGQRRREPYRALVQAHL
ARFGSSPDAARVLSELLEGAGRRRACRAMTSRQKRRAEYARVQELYKKCR
SRAAAEVIDGACGGVGHSLEEMETYWRPILERVSDAPGPTPEALHALGRT
QLWKPISVEEIKASRFDWRTSPGPDGIRSGQWRAVPVHLKAEMFNAWMAR
GEIPEILRQCRTVFVPKVERPGGPGEYRPISIASIPLRHFHSILARRLLA
CCPPDARQRGFICADGTLENSAVLDAVLGDSRKKLRECHVAVLDFAKAFD
TVSHEALVELLRLRGMPEQFCGYIAHLYDTASTTLAVNNEMSSPVKVGRG
VRQGDPLSPILFNVVMDLILASLPERVGYRLEMELVSALAYAYDLVLLAG
SKVGMQESISAVDCVGRQMGLRLNCRKSAVLSMIPDGHRKKHHYLTERTF
NIGGKPLRQVSCVERWRYLGVDFEASGCVTLEHSISSALNNISRAPLKPQ
QRLEILRAHLIPRFQHGFVLGNISDDRLRMLDVQIRKAVGQWLRLPADVP
KAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWSVARAAAKSDKI
RKKLRWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTP
TSTKWIRERCAQITGRDFVQFVHTHINALPSRIRGSRGRRGGGESSLTCR
AGCKVRETTAHILQQCHRTHGGRILRHNKIVSFVAKAMEENKWTVELEPR
LRTSVGLRKPAIIASRDGVGVIVDVQVVSGQRSLDELHREKRNKYGNHGE
LVELVAGRLGLPKAECVRATSCTISWRGVWSLTSYKELRSIIGLREPTLQ
IVPILALRGSHMNWTRFNQMTS
Ligand information
>8ibw Chain D (length=39) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
guagaucagcugauccaauuucgccggccggcgaugaaa
...<<<<<..>>>>>.....<<<<<<..>>>>>>.....
Receptor-Ligand Complex Structure
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PDB8ibw Structural RNA components supervise the sequential DNA cleavage in R2 retrotransposon.
Resolution3.6 Å
Binding residue
(original residue number in PDB)		S306 R307 Q308 R311 Y314 A315 Q318 E319 C324 R327 S406 R413 R446 V450 I465 I467 R473 N574 K733 R779 T899 G900 R901
Binding residue
(residue number reindexed from 1)		S131 R132 Q133 R136 Y139 A140 Q143 E144 C149 R152 S221 R228 R261 V265 I280 I282 R288 N389 K548 R594 T714 G715 R716
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003964 RNA-directed DNA polymerase activity
Biological Process
GO:0006278 RNA-templated DNA biosynthetic process
GO:0071897 DNA biosynthetic process

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Molecular Function
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Biological Process
External links
PDB RCSB:8ibw, PDBe:8ibw, PDBj:8ibw
PDBsum8ibw
PubMed37301196
UniProtV9H052

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