Structure of PDB 8gzg Chain C Binding Site BS03

Receptor Information
>8gzg Chain C (length=1049) Species: 1148 (Synechocystis sp. PCC 6803) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DLIEIQHASFHWFLEEGLIEELNSFSPISDYTGKLELHFLGKDYKLKQPK
YDVDESKRRDASYSVQMYVPTRLINKETGEIKEQEVFIGDLPLMTERGTF
IINGAERVIVNQIVRSPGVYYKKELDKNGRRTYSASLIPNRGAWLKFETD
KNGLVYVRIKTRKLSAQVLLKAIGLSDNEILDSLHPEFYQKTLDKEGNPT
EEEALVELYKKLRPPPTVSGGQQLLESRFFDPKRYDLGRVGRYKLNKKLR
LNEADTTRVLTPQDILAAINYLINLEFDVGTTDDIDHLGNRRVRSVGELL
QNQIRVGLNRLERIIRERMTVSESDALTPASLVNPKPLVAAIKEFFGSSQ
LSQFMDQTNPLAELTHKRRISALGPGGLTRERAGFAVRDIHPSHHGRICP
VETPEGPNAGLIGSLATCARVNDYGFIETPYFRVESGRVRKDLDPVYLTA
DEEDDMRVAPGDIPTDEEGNIIGESVPIRYRQEFSTTSPEQVDYVAVSPV
QIISVATSMIPFLEHDDANRALMGSNMQRQAVPLLRPERPLVGTGLEAQA
ARDSGMVIVSRTHGIVTYVDATEIRVQPHSGEEIVYPIQKYQRSNQDTCL
NQRPLVYAGEDVVPGQVLADGSATEGGELALGQNILVAYMPWEGYNYEDA
ILISERLVYDDVYTSIHIEKFEIEARQTKLGPEEITREIPNVGEDALRNL
DEHGIIRIGAWVESGDILVGKVTPKGEADQPPEEKLLRAIFGEKARDVRD
NSLRVPNGEKGRVVDVRVFTREKGDELPPGANMVVRIYVAQKRKIQVGDK
MAGRHGNKGIISRILPIEDMPYLPDGRPIDIALNPLGVPSRMNVGQVFEC
LLGWAGENLGVRFKITPFDMYGEEASRDTVHGLLEEASQRPNKDWVFNEN
HPGKIQVFDGRTGEPFDRPITVGQAYMLKLVHLVDDKIHARSTGPYSLVT
QQPLGGKAQQGGQRFGEMEVWALEAYGAAYILQELLTVKSDDMQGRNEAL
NAIVKGKSIPRPGTPESFKVLMRELQSLGLDIAAHKVQLSEDGESADAE
Ligand information
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8gzg Cryo-EM structure of Synechocystis sp. PCC 6803 CTP-bound RPitc
Resolution3.13 Å
Binding residue
(original residue number in PDB)		P418 Q544 K821 K829
Binding residue
(residue number reindexed from 1)		P404 Q530 K800 K808
Enzymatic activity
Enzyme Commision number 2.7.7.6: DNA-directed RNA polymerase.
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
GO:0016779 nucleotidyltransferase activity
GO:0032549 ribonucleoside binding
GO:0034062 5'-3' RNA polymerase activity
Biological Process
GO:0006351 DNA-templated transcription
Cellular Component
GO:0000428 DNA-directed RNA polymerase complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8gzg, PDBe:8gzg, PDBj:8gzg
PDBsum8gzg
PubMed
UniProtP77965|RPOB_SYNY3 DNA-directed RNA polymerase subunit beta (Gene Name=rpoB)

[Back to BioLiP]