Structure of PDB 7rjt Chain C Binding Site BS03

Receptor Information
>7rjt Chain C (length=902) Species: 6500 (Aplysia californica) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PGDRQWYSFLASSLVTFGSGLVVIIIYRIVLWLCCDWAGELISGQTTTGR
ILVGLVFLLSIASLIIYFIDASTNTSSTTQQVDLAFNVFFMIYFFIRFVA
ANDKLWFWVELFSFVDYFTIPPSFVAIYLDRNWLGLRFLRALRLMSIPDI
LTYLNVLKTSTLIRLVQLVVSFVSLWLTAAGFLHLLENSGDPFFDFGNAQ
HLTYWECLYFLMVTMSTVGFGDIFATTVLGRTFVVIFIMIFIGLFASFIP
EIAEILGKRQKYGGSYKKERGKRHVVVCGYITFDSVSNFLKDFLHKDRED
VDVEIVFLHKGLPGLELEGLLKRHFTQVEYFWGSVMDANDLERVKIQEAD
ACLVLANKYCQDPDQEDAANIMRVISIKNYHSDIKVIVQLLQYHNKAYLL
NIPSWDWKRGDDAVCVAELKLGFIAQSCLAPGFSTLMANLFTMRSYKPTP
EMSQWQTDYMRGTGMEMYTEYLSSAFNALTFPEAAELCFSKLKLLLLAIE
VRQEDTRESTLAINPGPKVKIENATQGFFIAESAEEVKRAFYYCKNCHAN
VSDVRQIKKCKCRPEPRKFDSTGMFHWCPDRPLNDCLQDRSQASASGLRN
HVVVCLFADAASPLIGLRNLVMPLRASNFHYHELKPTIIVGNLDYLHREW
KTLQNFPKLSILPGSPLNRANLRAVNINLCDMCVIVSAKDRNMEDPNLVD
KEAILCSLNIKAMTFDDAGANVPLITELANDSNVQFLDQDDDDDPDTELY
MTQPFACGTAFAVSVLDSLMSTSYFNDNALTLIRTLITGGATPELEQILA
EGAGMRGGYCSPAVLANRDRCRVAQISLFDGPLAQFGQGGHYGELFVYAL
RHFGILCIGLYRFRDTNESVRSPSSKRYVITNPPEDFPLLPTDQVYVLTY
KQ
Ligand information
Ligand IDPGW
InChIInChI=1S/C40H77O10P/c1-3-5-7-9-11-13-15-17-18-20-22-24-26-28-30-32-40(44)50-38(36-49-51(45,46)48-34-37(42)33-41)35-47-39(43)31-29-27-25-23-21-19-16-14-12-10-8-6-4-2/h17-18,37-38,41-42H,3-16,19-36H2,1-2H3,(H,45,46)/b18-17-/t37-,38+/m0/s1
InChIKeyPAZGBAOHGQRCBP-HGWHEPCSSA-N
SMILES
SoftwareSMILES
CACTVS 3.341CCCCCCCCCCCCCCCC(=O)OC[CH](CO[P](O)(=O)OC[CH](O)CO)OC(=O)CCCCCCCC=CCCCCCCCC
OpenEye OEToolkits 1.5.0CCCCCCCCCCCCCCCC(=O)OC[C@H](CO[P@@](=O)(O)OC[C@H](CO)O)OC(=O)CCCCCCCC=CCCCCCCCC
OpenEye OEToolkits 1.5.0CCCCCCCCCCCCCCCC(=O)OCC(COP(=O)(O)OCC(CO)O)OC(=O)CCCCCCCC=CCCCCCCCC
CACTVS 3.341CCCCCCCCCCCCCCCC(=O)OC[C@H](CO[P@](O)(=O)OC[C@@H](O)CO)OC(=O)CCCCCCC\C=C/CCCCCCCC
ACDLabs 10.04O=C(OC(COP(=O)(OCC(O)CO)O)COC(=O)CCCCCCCCCCCCCCC)CCCCCCC\C=C/CCCCCCCC
FormulaC40 H77 O10 P
Name(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate;
1-Palmitoyl-2-Oleoyl-sn-Glycero-3-[Phospho-(1-glycerol)];
PHOSPHATIDYLGLYCEROL
ChEMBL
DrugBank
ZINCZINC000008552309
PDB chain7rjt Chain C Residue 1106 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7rjt CryoEM structure of Aplysia Slo1 with 10 mM Ba2+ at 2.93 A
Resolution2.93 Å
Binding residue
(original residue number in PDB)
W235 T262 W264 E265 L267
Binding residue
(residue number reindexed from 1)
W176 T203 W205 E206 L208
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005216 monoatomic ion channel activity
GO:0005267 potassium channel activity
GO:0060072 large conductance calcium-activated potassium channel activity
Biological Process
GO:0006811 monoatomic ion transport
GO:0006813 potassium ion transport
GO:0055085 transmembrane transport
GO:0071805 potassium ion transmembrane transport
Cellular Component
GO:0016020 membrane
GO:0045211 postsynaptic membrane

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:7rjt, PDBe:7rjt, PDBj:7rjt
PDBsum7rjt
PubMed
UniProtQ5QJC5

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