Structure of PDB 6nyd Chain C Binding Site BS03

Receptor Information
>6nyd Chain C (length=166) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SRKSTASSLLLRQYRELTDPKKAIPSFHIELEDDSNIFTWNIGVMVLNED
SIYHGGFFKAQMRFPEDFPFSPPQFRFTPAIYHPNVYRDGRLCISILHQS
ETWSPVQTVESVLISIVSLLEDPNINSPANVDAAVDYRKNPEQYKQRVKM
EVERSKQDIPKGFIMP
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain6nyd Chain C Residue 704 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6nyd Structural insights into E1 recognition and the ubiquitin-conjugating activity of the E2 enzyme Cdc34.
Resolution1.65 Å
Binding residue
(original residue number in PDB)		E51 H56
Binding residue
(residue number reindexed from 1)		E49 H54
Annotation score4
Enzymatic activity
Enzyme Commision number 2.3.2.23: E2 ubiquitin-conjugating enzyme.
External links
PDB RCSB:6nyd, PDBe:6nyd, PDBj:6nyd
PDBsum6nyd
PubMed31341161
UniProtP14682|UBC3_YEAST Ubiquitin-conjugating enzyme E2-34 kDa (Gene Name=CDC34)

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