Structure of PDB 6j9f Chain C Binding Site BS03

Receptor Information
>6j9f Chain C (length=1296) Species: 342109 (Xanthomonas oryzae pv. oryzae MAFF 311018) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SYSFTEKKRIRKDFGKQRSILEVPFLLAIQVDSYREFLDLGLHAALKSVF
PISSYSGNAALEYVGYKLGQPVFDERECRQRGMSYGAPLRVTVRLVIYDR
ESSTKAIKYVKEQEVYLGEIPLMTGNGTFIVNGTERVIVSQLHRSPGVFF
DHDRGKTHSSGKLLYSARIIPYRGSWLDFEFDPKDALFTRIDRRRKLPVS
ILLRALGYNNEEMLAEFFEINTFHIVQLELVPERLRGETLNFDLADGDKV
IVEAGKRITARHVKQLEAAGVAALAVPDDYLVGRILSHDVVDGSTGELLA
NANDEISEDQLTAFRKAGVDAVGTLWVNDLDRGPYLSNTLRIDPTKTQLE
ALVEIYRMMRPGEPPTKEAAQNLFHNLFFTFERYDLSTVGRMKFNRRVGR
KDVLGESVLYDKKYFAERNDEESKRLVAEHTDTSDILEVIKVLTEIRNGR
GVVDDIDHLGNRRVRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTP
QELINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALGPGGLT
RERAGFEVRDVHPTHYGRVCTIETPEGPNIGLINSLAVFARTNQYGFLET
PYRKVLDGKVSDDVEYLSAIEENEYVIAQANALTDAKNMLTEQFVPCRFQ
GESLLKPPSEVHFMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQA
VPTLRSQKPLVGTGIERAVARDSGVTVNALRGGVIEQIDAARIVVKVNEA
EIAGVDIYNLIKYTRSNQNTCINQRPLVNVGDVIARGDVLADGPSTDIGE
LALGQNMLIAFMPWNGYNFEDSILLSERVVEEDRYTTIHIEELTCVARDT
KLGPEEISADIPNVSEQALNRLDESGVVYIGAEVRAGDIMVGKVTPKGSD
VKDSSLRVPPGMDGTVIDVQVFTRDGIEKDKRARQIEENEIKRVKKDFDD
QFRILEAAIYARLRSQIVGKIERAQKQIQAHEKEFEARFADKRGKITQGD
DLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSNVVPVEDMPYMAT
GESVDIVLNPLGVPSRMNIGQILEVHLGWAAKGLGRKIQRMLEAQAAVSE
LRKFLDDIYNHDQRVDLSQFSDEELLNLGKNLIDGVPMATPVFDGASEAE
IKRMLELADLPQSGQTQLYDGRTGEAFDRKTTVGYMHYLKLNHLVDDKMH
ARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK
SDDVQGRNQMYKNIVDGEHEMVAGMPESFNVLVKEIRSLAIHMELE
Ligand information
Receptor-Ligand Complex Structure
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PDB6j9f Structural basis for transcription antitermination at bacterial intrinsic terminator.
Resolution3.95 Å
Binding residue
(original residue number in PDB)		R568 P592 E593 K1106 H1279 S1294 L1301 Q1306
Binding residue
(residue number reindexed from 1)		R551 P575 E576 K1025 H1193 S1208 L1215 Q1220
Enzymatic activity
Enzyme Commision number 2.7.7.6: DNA-directed RNA polymerase.
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
GO:0016779 nucleotidyltransferase activity
GO:0032549 ribonucleoside binding
GO:0034062 5'-3' RNA polymerase activity
Biological Process
GO:0006351 DNA-templated transcription
Cellular Component
GO:0000428 DNA-directed RNA polymerase complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6j9f, PDBe:6j9f, PDBj:6j9f
PDBsum6j9f
PubMed31296855
UniProtQ2NZX8|RPOB_XANOM DNA-directed RNA polymerase subunit beta (Gene Name=rpoB)

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