Structure of PDB 6f7k Chain C Binding Site BS03

Receptor Information

>6f7k Chain C (length=547) Species: 454798 (Salmonella phage Det7)

MLRGELNNEGVINFSHADTYGNDSVGAHLQNVVYPTDAPFNAATDGTTDT
TVAIKSAIAHCISKGKKLVLNHLFMITDTLVISDGLHVECLTSDSGVKSD
VPAGKFAVKITGANSGWFGGKILGKNLPESTTVRQDGVLFDENAEYCFIT
GTEVTGFFAKGLHTSDADGVGYGIYDKGYGTLISKCYANSKFCVALGGTE
GRVLKNRITNNYLTSGEAKPWSWASNYWDGIVSENAHRYVIAFNDVSACG
QSGIYFGGNGGYSTDNIIVNNTVYACWNRGIDMGLFSEKSATNDVLRNII
KGNNTYNNRENNIWLAGVSNCSVVGNTSWFDTNYDVIFAGYPGGHICISL
ASGANGEACVGNTIDSNTCIDPRGNAGITVPTGATGNVFGSGNNLSQAGA
IYIASPDLITSNRFELAVTGSFTPVLLPESGSITLSSSSTGVFRATGNRI
DFSVTVNVSSISSPSGNLNIAYLPGMSGKTSSTSMFIIDYWNDLTLSSGV
IPLASLNLENQDQITVYRTDGGRVLYDFSSLMKSTSSFILKGFVDFN

Ligand information

• Ligand ID: GLA
• InChI: InChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3+,4+,5-,6+/m1/s1
• InChIKey: WQZGKKKJIJFFOK-PHYPRBDBSA-N
• SMILES:
  CACTVS 3.341: OC[C@H]1O[C@H](O)[C@H](O)[C@@H](O)[C@H]1O
  OpenEye OEToolkits 1.5.0: C(C1C(C(C(C(O1)O)O)O)O)O
  OpenEye OEToolkits 1.5.0: C([C@@H]1[C@@H]([C@@H]([C@H]([C@H](O1)O)O)O)O)O
  CACTVS 3.341: OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
  ACDLabs 10.04: OC1C(O)C(OC(O)C1O)CO
• Formula: C6 H12 O6
• Name: alpha-D-galactopyranose;
  alpha-D-galactose;
  D-galactose;
  galactose;
  ALPHA D-GALACTOSE
• ChEMBL: CHEMBL1233058
• ZINC: ZINC000000901155
• PDB chain: 6f7k Chain I Residue 4

Receptor-Ligand Complex Structure

Structure summary

• PDB: 6f7k Time-resolved DNA release from an O-antigen-specificSalmonellabacteriophage with a contractile tail.
• Resolution: 2.1 Å
• Binding residue (original residue number in PDB): N529 R530 D533 L536 W565
• Binding residue (residue number reindexed from 1): N278 R279 D282 L285 W314
• Annotation score: 4

External links

• PDB: RCSB:6f7k, PDBe:6f7k, PDBj:6f7k
• PDBsum: 6f7k
• PubMed: 31189652
• UniProt: A0A0C5PVE3