Structure of PDB 5ytk Chain C Binding Site BS03
Receptor Information
>5ytk Chain C (length=273) Species:
9606
(Homo sapiens) [
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KLSLQDVAELIRARACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQY
DLPYPEAIFELPFFFHNPKPFFTLAKELYPGNYKPNVTHYFLRLLHDKGL
LLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGEDIRAD
VMADRVPRCPVCTGVVKPDIVFFGEPLPQRFLLHVVDFPMADLLLILGTS
LEVEPFASLTEAVRSSVPRLLINRDLVGPLAWHPRSRDVAQLGDVVHGVE
SLVELLGWTEEMRDLVQRETGKL
Ligand information
Ligand ID
LYS
InChI
InChI=1S/C6H14N2O2/c7-4-2-1-3-5(8)6(9)10/h5H,1-4,7-8H2,(H,9,10)/p+1/t5-/m0/s1
InChIKey
KDXKERNSBIXSRK-YFKPBYRVSA-O
SMILES
Software
SMILES
CACTVS 3.341
N[CH](CCCC[NH3+])C(O)=O
ACDLabs 10.04
O=C(O)C(N)CCCC[NH3+]
OpenEye OEToolkits 1.5.0
C(CC[NH3+])C[C@@H](C(=O)O)N
CACTVS 3.341
N[C@@H](CCCC[NH3+])C(O)=O
OpenEye OEToolkits 1.5.0
C(CC[NH3+])CC(C(=O)O)N
Formula
C6 H15 N2 O2
Name
LYSINE
ChEMBL
DrugBank
ZINC
PDB chain
5ytk Chain C Residue 403 [
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Receptor-Ligand Complex Structure
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PDB
5ytk
Sensing and Transmitting Intracellular Amino Acid Signals through Reversible Lysine Aminoacylations
Resolution
2.7 Å
Binding residue
(original residue number in PDB)
G295 E296
Binding residue
(residue number reindexed from 1)
G174 E175
Annotation score
1
Enzymatic activity
Catalytic site (original residue number in PDB)
P155 D156 F157 R158 N229 D231 H248
Catalytic site (residue number reindexed from 1)
P34 D35 F36 R37 N108 D110 H127
Enzyme Commision number
2.3.1.286
: protein acetyllysine N-acetyltransferase.
Gene Ontology
Molecular Function
GO:0017136
NAD-dependent histone deacetylase activity
GO:0051287
NAD binding
GO:0070403
NAD+ binding
View graph for
Molecular Function
External links
PDB
RCSB:5ytk
,
PDBe:5ytk
,
PDBj:5ytk
PDBsum
5ytk
PubMed
29198988
UniProt
Q9NTG7
|SIR3_HUMAN NAD-dependent protein deacetylase sirtuin-3, mitochondrial (Gene Name=SIRT3)
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